miRNA display CGI


Results 21 - 40 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 69819 0.66 0.687571
Target:  5'- gCCGCgaCCGGCGUCcGCCCgGUc-CGCUg -3'
miRNA:   3'- -GGCG--GGCUGCGGaCGGGgCAucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 193702 0.66 0.687571
Target:  5'- -aGUCCGAuucccccuCGCCcGCCCCGccGGUGUCc -3'
miRNA:   3'- ggCGGGCU--------GCGGaCGGGGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 107133 0.66 0.687571
Target:  5'- aCCGCgacgggaaCGACGUCggcGCCCCcGgcgAGgGCCg -3'
miRNA:   3'- -GGCGg-------GCUGCGGa--CGGGG-Ca--UCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 26629 0.66 0.687571
Target:  5'- aCCGUCCG-CGUCcgcGCaCCCGgacGGCgGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGa--CG-GGGCa--UCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 183120 0.66 0.687571
Target:  5'- gUGUUCGGCGgCgGCuCCCGUAcGCGCa -3'
miRNA:   3'- gGCGGGCUGCgGaCG-GGGCAU-CGCGg -5'
11056 3' -63.5 NC_002794.1 + 76122 0.66 0.687571
Target:  5'- cCCGCCCucUGaCC-GCCCCGcAGCuGUCg -3'
miRNA:   3'- -GGCGGGcuGC-GGaCGGGGCaUCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 12921 0.66 0.686637
Target:  5'- aCCGCCuggccguCGACGaCCUGgcggaCUUCGUGGCGUUg -3'
miRNA:   3'- -GGCGG-------GCUGC-GGAC-----GGGGCAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 66646 0.66 0.681961
Target:  5'- uCCGUCCGggggcaucgguaacgGCGUCguggucaacgGCCCCG--GCGCCc -3'
miRNA:   3'- -GGCGGGC---------------UGCGGa---------CGGGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 67388 0.66 0.678214
Target:  5'- aCGCgUCGGCGCCaGCgUCG--GCGCCa -3'
miRNA:   3'- gGCG-GGCUGCGGaCGgGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 108122 0.66 0.678214
Target:  5'- aCGCCgCGcuaucagaACGCCggcuggauucGCCgCCGggAGCGCCg -3'
miRNA:   3'- gGCGG-GC--------UGCGGa---------CGG-GGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 106829 0.66 0.678214
Target:  5'- gUCGUCCGGCGCUcGgCCUGcGGCuccGCCu -3'
miRNA:   3'- -GGCGGGCUGCGGaCgGGGCaUCG---CGG- -5'
11056 3' -63.5 NC_002794.1 + 95037 0.66 0.678214
Target:  5'- cUCGCCgGugGCg-GCgCCCGaGGCGUa -3'
miRNA:   3'- -GGCGGgCugCGgaCG-GGGCaUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 82936 0.66 0.678214
Target:  5'- gCCGCuCCGACuCCaGgCCCGccGCGCa -3'
miRNA:   3'- -GGCG-GGCUGcGGaCgGGGCauCGCGg -5'
11056 3' -63.5 NC_002794.1 + 178836 0.66 0.678214
Target:  5'- cCCGCggGucuCGCgUGCCCCGgaccgAGcCGCCc -3'
miRNA:   3'- -GGCGggCu--GCGgACGGGGCa----UC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 124143 0.66 0.678214
Target:  5'- gCGCCCGGgagcggucucCGCgggGCCCgGgagAGCGUCg -3'
miRNA:   3'- gGCGGGCU----------GCGga-CGGGgCa--UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 185412 0.66 0.678214
Target:  5'- -gGCCCGAcCGCCgucgaCUCGacgcGGCGCCa -3'
miRNA:   3'- ggCGGGCU-GCGGacg--GGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 181749 0.66 0.678214
Target:  5'- gCGgCCGGCcaGCCcGCUgacgCCGaUGGCGCCg -3'
miRNA:   3'- gGCgGGCUG--CGGaCGG----GGC-AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 118388 0.66 0.678214
Target:  5'- gCCGCUCGGCGgC-GCucagCCCGUAGCaCUg -3'
miRNA:   3'- -GGCGGGCUGCgGaCG----GGGCAUCGcGG- -5'
11056 3' -63.5 NC_002794.1 + 145745 0.66 0.678214
Target:  5'- gCGCCggcauCGACGgC-GaCCCCGagcgAGCGCCa -3'
miRNA:   3'- gGCGG-----GCUGCgGaC-GGGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 69718 0.66 0.678214
Target:  5'- uCgGCaCCGuCGagUGCCgCCGgAGCGCCa -3'
miRNA:   3'- -GgCG-GGCuGCggACGG-GGCaUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.