miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 59 0.68 0.565263
Target:  5'- aCGgCCGACGCCcGCCaCCGguaacgaaaCGCCc -3'
miRNA:   3'- gGCgGGCUGCGGaCGG-GGCauc------GCGG- -5'
11056 3' -63.5 NC_002794.1 + 261 0.7 0.435852
Target:  5'- gCCGCCgCgcgcgcggacgcgagGACGgCgGCCCUGgcGCGCCg -3'
miRNA:   3'- -GGCGG-G---------------CUGCgGaCGGGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 597 0.68 0.575522
Target:  5'- uCCGUUCGugGCCgggugcggucaggcgGCCCggUGUGGCGUUc -3'
miRNA:   3'- -GGCGGGCugCGGa--------------CGGG--GCAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 8328 0.68 0.583946
Target:  5'- gCGCCCcGCGCCaaacGCCCCa-AGUGCa -3'
miRNA:   3'- gGCGGGcUGCGGa---CGGGGcaUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 8553 0.68 0.583946
Target:  5'- aCCGUCCG-CGCCUGCCgCGaacuGCaaGUCu -3'
miRNA:   3'- -GGCGGGCuGCGGACGGgGCau--CG--CGG- -5'
11056 3' -63.5 NC_002794.1 + 10975 0.8 0.103642
Target:  5'- aCGUCCGAUGCCUGCUCCG-AG-GCCg -3'
miRNA:   3'- gGCGGGCUGCGGACGGGGCaUCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 11077 0.73 0.319801
Target:  5'- -gGUaCGcCGCCUGCCUCGUcgucGGCGCCa -3'
miRNA:   3'- ggCGgGCuGCGGACGGGGCA----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 11777 0.68 0.574587
Target:  5'- aCGCUCacggGAuCGCCgcgGUgUCCGUGGCGCCg -3'
miRNA:   3'- gGCGGG----CU-GCGGa--CG-GGGCAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12036 0.66 0.69689
Target:  5'- gCGUCCG-CGCCUuCCCCugccgGUAucucugggccGCGCCg -3'
miRNA:   3'- gGCGGGCuGCGGAcGGGG-----CAU----------CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12179 0.77 0.175161
Target:  5'- gCCG-CCGACGCC-GCCgCGgccgGGCGCCg -3'
miRNA:   3'- -GGCgGGCUGCGGaCGGgGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12224 0.71 0.384694
Target:  5'- gCGUCggCGGCGCCggcgGCgCCGUccgcGGCGCCg -3'
miRNA:   3'- gGCGG--GCUGCGGa---CGgGGCA----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12424 0.69 0.501368
Target:  5'- gCGCgCCGACugGCagCUGUCCCGcgucAGCGCCc -3'
miRNA:   3'- gGCG-GGCUG--CG--GACGGGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12469 0.66 0.691304
Target:  5'- cCUGCCCGACGaccgucugaucgucaCCUGCacguuCCCG-AGcCGCUc -3'
miRNA:   3'- -GGCGGGCUGC---------------GGACG-----GGGCaUC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 12583 0.77 0.179284
Target:  5'- cCCGUUCGGCGCCUGCguCCCcacgcuGCGCCa -3'
miRNA:   3'- -GGCGGGCUGCGGACG--GGGcau---CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12921 0.66 0.686637
Target:  5'- aCCGCCuggccguCGACGaCCUGgcggaCUUCGUGGCGUUg -3'
miRNA:   3'- -GGCGG-------GCUGC-GGAC-----GGGGCAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 13313 0.69 0.49072
Target:  5'- cCCGCCCGGCGagcgacgaCCgcucCCCCGgucggggguggcGGCGCCc -3'
miRNA:   3'- -GGCGGGCUGC--------GGac--GGGGCa-----------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 13750 0.66 0.668823
Target:  5'- gCCGgCCGAcaccagacuCGCC-GCCCCGga--GCCa -3'
miRNA:   3'- -GGCgGGCU---------GCGGaCGGGGCaucgCGG- -5'
11056 3' -63.5 NC_002794.1 + 13852 0.71 0.393201
Target:  5'- aCCGCCuCGuCGCC-GCCgCCGcgacccgguucuccgAGCGCCg -3'
miRNA:   3'- -GGCGG-GCuGCGGaCGG-GGCa--------------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 14143 0.67 0.589577
Target:  5'- aCCGUCCGGucCGUCgucgaGCCCCGccgccugaaccuGCGCCu -3'
miRNA:   3'- -GGCGGGCU--GCGGa----CGGGGCau----------CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 14502 0.75 0.230577
Target:  5'- gCgGCCCG-CGCUcgcgGCgCUCGUGGCGCCg -3'
miRNA:   3'- -GgCGGGCuGCGGa---CG-GGGCAUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.