miRNA display CGI


Results 41 - 60 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 21687 0.68 0.583946
Target:  5'- cCCGCuCCGGCuCCccGCCUCGgcguccacgGGCGCUg -3'
miRNA:   3'- -GGCG-GGCUGcGGa-CGGGGCa--------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 23607 0.68 0.574587
Target:  5'- gCCGaCCCGACcCCgcggGCgCCCGgacGCGCg -3'
miRNA:   3'- -GGC-GGGCUGcGGa---CG-GGGCau-CGCGg -5'
11056 3' -63.5 NC_002794.1 + 23681 0.69 0.492487
Target:  5'- gUC-CCCGAacacgcgcCGCCgagGCCCCGaAGCGUCc -3'
miRNA:   3'- -GGcGGGCU--------GCGGa--CGGGGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 24000 0.73 0.29371
Target:  5'- uCCGUCCGACGg--GCCgCCGUcaccgcGGCGCCu -3'
miRNA:   3'- -GGCGGGCUGCggaCGG-GGCA------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 24051 0.68 0.534802
Target:  5'- cCCGUCCGccCGCCccggaccacacccgUGCgCCCGggcgGGCGUCg -3'
miRNA:   3'- -GGCGGGCu-GCGG--------------ACG-GGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 25623 0.66 0.672583
Target:  5'- cCCGUCCGAUcaGCaCUcuuuguucucucucgGCCCCGU--CGCCa -3'
miRNA:   3'- -GGCGGGCUG--CG-GA---------------CGGGGCAucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 26080 0.7 0.456876
Target:  5'- aCGCCaCGcggggcaGCGCCgacgGCCCCGgcGauCGCCg -3'
miRNA:   3'- gGCGG-GC-------UGCGGa---CGGGGCauC--GCGG- -5'
11056 3' -63.5 NC_002794.1 + 26600 0.69 0.510318
Target:  5'- cCCGCUCG-CGCCccGCCCCc--GCGUCc -3'
miRNA:   3'- -GGCGGGCuGCGGa-CGGGGcauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 26629 0.66 0.687571
Target:  5'- aCCGUCCG-CGUCcgcGCaCCCGgacGGCgGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGa--CG-GGGCa--UCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 28677 0.7 0.466297
Target:  5'- gCCGCCgGugGCCgucgccGCCgCCGUuGCuGCUg -3'
miRNA:   3'- -GGCGGgCugCGGa-----CGG-GGCAuCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 28726 0.68 0.546739
Target:  5'- gCCGUCCGAC-CgUGuCCCCGaGGC-CCg -3'
miRNA:   3'- -GGCGGGCUGcGgAC-GGGGCaUCGcGG- -5'
11056 3' -63.5 NC_002794.1 + 30734 0.66 0.687571
Target:  5'- uCCGCCCGAa--CUGgCCgCGgcUGGCGCg -3'
miRNA:   3'- -GGCGGGCUgcgGACgGG-GC--AUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 31333 0.68 0.565263
Target:  5'- uCgGCUCGGCGCCcGCCgUGUc-CGCCg -3'
miRNA:   3'- -GgCGGGCUGCGGaCGGgGCAucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 31381 0.7 0.466297
Target:  5'- cCUcCCCGuCGUCggcgGCCCCGccGCGCCc -3'
miRNA:   3'- -GGcGGGCuGCGGa---CGGGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 32174 0.68 0.574587
Target:  5'- cCCGCCUGGCcCCgGUCCCGcagaucgagaUGGCGUUc -3'
miRNA:   3'- -GGCGGGCUGcGGaCGGGGC----------AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 32285 0.66 0.668823
Target:  5'- gCGagCGACGCCgccGCCgCCGcGGCgGCCg -3'
miRNA:   3'- gGCggGCUGCGGa--CGG-GGCaUCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 32498 0.69 0.492487
Target:  5'- aUGCUCGACGUCUugccgGCuCCCGccGUGCCg -3'
miRNA:   3'- gGCGGGCUGCGGA-----CG-GGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 33684 0.66 0.687571
Target:  5'- gCGCUCGcuGCGCCUG-UUCGUGGCgggcgaGCCg -3'
miRNA:   3'- gGCGGGC--UGCGGACgGGGCAUCG------CGG- -5'
11056 3' -63.5 NC_002794.1 + 34778 0.68 0.583946
Target:  5'- gCCGCCCG-CGCCaGCCgaGUcG-GCCg -3'
miRNA:   3'- -GGCGGGCuGCGGaCGGggCAuCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 34833 0.68 0.565263
Target:  5'- cUCG-CCGGCGCCggagcggGCgUCGgagcgGGCGCCg -3'
miRNA:   3'- -GGCgGGCUGCGGa------CGgGGCa----UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.