miRNA display CGI


Results 61 - 80 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 36157 0.67 0.601806
Target:  5'- uCCG-CCGcCGCCUcccccccacccgcGCCCCG-GGcCGCCa -3'
miRNA:   3'- -GGCgGGCuGCGGA-------------CGGGGCaUC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 36234 0.66 0.64903
Target:  5'- -gGCCCGGuCGauauagGCCCCGUagucgauGGCGUCg -3'
miRNA:   3'- ggCGGGCU-GCgga---CGGGGCA-------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 36525 0.72 0.347592
Target:  5'- gUCGCCCGuCGCCU-CCCaccAGUGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGAcGGGgcaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 37051 0.71 0.407382
Target:  5'- cCUGCCCGucGCGCUcGUCCuCGUacucggcgaagcgGGCGCCg -3'
miRNA:   3'- -GGCGGGC--UGCGGaCGGG-GCA-------------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 37609 0.68 0.546739
Target:  5'- gCCGCaCCGAgaaggugaCGUCgcgGaCCCCGUAGcCGCUc -3'
miRNA:   3'- -GGCG-GGCU--------GCGGa--C-GGGGCAUC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 37932 0.66 0.649974
Target:  5'- aCCGCCgCGGcCGCCcgUGCCUCGgcGacuCGCUc -3'
miRNA:   3'- -GGCGG-GCU-GCGG--ACGGGGCauC---GCGG- -5'
11056 3' -63.5 NC_002794.1 + 38450 0.66 0.69689
Target:  5'- aCUGaggagCCGGCGCg-GCCgCGgcGCGCCc -3'
miRNA:   3'- -GGCg----GGCUGCGgaCGGgGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 38539 0.68 0.552277
Target:  5'- gCCGCcgCCGcCGCCU-CCCCGccagaagcccgccGGCGCCu -3'
miRNA:   3'- -GGCG--GGCuGCGGAcGGGGCa------------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 38698 0.71 0.416204
Target:  5'- aCCGCCgCGcCGUCgagcGCCCCGgc-CGCCg -3'
miRNA:   3'- -GGCGG-GCuGCGGa---CGGGGCaucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 40334 0.69 0.519334
Target:  5'- gCCGCgCgGACGC--GCCaCCGgcGGCGCCg -3'
miRNA:   3'- -GGCG-GgCUGCGgaCGG-GGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 40505 0.67 0.61218
Target:  5'- gCCGCUCGA-GUCacgGCCgCCGacGCGCCg -3'
miRNA:   3'- -GGCGGGCUgCGGa--CGG-GGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 41250 0.73 0.313119
Target:  5'- gCCG-CCGACGCCggcgGCCCguCGUcGCGCUc -3'
miRNA:   3'- -GGCgGGCUGCGGa---CGGG--GCAuCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 41293 0.69 0.510318
Target:  5'- gCgGCuCCGACGCggGCCgCGUGGgGUCu -3'
miRNA:   3'- -GgCG-GGCUGCGgaCGGgGCAUCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 41689 0.71 0.369542
Target:  5'- gCGCCCGGacCGCCggaucGUCCCG-GGCGCg -3'
miRNA:   3'- gGCGGGCU--GCGGa----CGGGGCaUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 41864 0.71 0.400251
Target:  5'- gCCGCCgGGCagggccggGCgCUGCCacgccaCGUAGCGCUc -3'
miRNA:   3'- -GGCGGgCUG--------CG-GACGGg-----GCAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 42261 0.67 0.602748
Target:  5'- -aGCCCGcucCGCCcucGCCCCGc--CGCCg -3'
miRNA:   3'- ggCGGGCu--GCGGa--CGGGGCaucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 43889 0.66 0.677276
Target:  5'- cCCGgCCGuCGCCggcGUCUCGUgaggagcGGCGCg -3'
miRNA:   3'- -GGCgGGCuGCGGa--CGGGGCA-------UCGCGg -5'
11056 3' -63.5 NC_002794.1 + 44416 0.74 0.275252
Target:  5'- aCCGgCCGGCGCCgagcgGCUcgacgacaCCGgcGCGCCc -3'
miRNA:   3'- -GGCgGGCUGCGGa----CGG--------GGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 44703 0.67 0.593335
Target:  5'- gCCGCCCGgccGCGaCCgcgGCgaCGUcggccGGCGCCg -3'
miRNA:   3'- -GGCGGGC---UGC-GGa--CGggGCA-----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 44768 0.75 0.225444
Target:  5'- gCCGuCCCGACGCagcGCCuCCGUgaucGGCGUCa -3'
miRNA:   3'- -GGC-GGGCUGCGga-CGG-GGCA----UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.