miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 195594 0.7 0.449244
Target:  5'- aCCGgCCGACGCgc-CCCCGcgcUGGCGUCc -3'
miRNA:   3'- -GGCgGGCUGCGgacGGGGC---AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 195554 0.7 0.449244
Target:  5'- aCGCCCuGA-GCC-GCCCCG-AGcCGCCc -3'
miRNA:   3'- gGCGGG-CUgCGGaCGGGGCaUC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 195311 0.68 0.555979
Target:  5'- aCCGCCgCGuCGCCUucGCCgaGUAGUGgCu -3'
miRNA:   3'- -GGCGG-GCuGCGGA--CGGggCAUCGCgG- -5'
11056 3' -63.5 NC_002794.1 + 195169 0.66 0.659408
Target:  5'- gCCGUCCaGCucucCUUGCCCgGgcacAGCGCCg -3'
miRNA:   3'- -GGCGGGcUGc---GGACGGGgCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 194838 0.7 0.440847
Target:  5'- gCgGCCCGGCGUCUccaGCCgcaCCGUcugcccGCGCCg -3'
miRNA:   3'- -GgCGGGCUGCGGA---CGG---GGCAu-----CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 194504 0.75 0.218916
Target:  5'- gCGCCCGGC-CCgcgGCCCgCGUgccgccggcccagcAGCGCCg -3'
miRNA:   3'- gGCGGGCUGcGGa--CGGG-GCA--------------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 194310 0.69 0.501368
Target:  5'- gCGCCa-GCGCCUGCCgcagCGgaucGCGCCa -3'
miRNA:   3'- gGCGGgcUGCGGACGGg---GCau--CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 194263 0.8 0.101151
Target:  5'- cUCGCCCGACGCC-GCCUCGcacGGCGCg -3'
miRNA:   3'- -GGCGGGCUGCGGaCGGGGCa--UCGCGg -5'
11056 3' -63.5 NC_002794.1 + 194084 0.66 0.668823
Target:  5'- gCCGCcaCCGcCGUgUGCCCCGaacacGUGCUg -3'
miRNA:   3'- -GGCG--GGCuGCGgACGGGGCau---CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 194038 0.76 0.205874
Target:  5'- cUCGCCCGcCGCCgccGCCgCCGccgccgagAGCGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGa--CGG-GGCa-------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 193937 0.67 0.631075
Target:  5'- aCCG-CCGGCuCCgGCCCCGc--CGCCa -3'
miRNA:   3'- -GGCgGGCUGcGGaCGGGGCaucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 193791 0.78 0.148595
Target:  5'- aUCGCCCGAcgaCGCCgGCgCCCGcucgucUGGCGCCg -3'
miRNA:   3'- -GGCGGGCU---GCGGaCG-GGGC------AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 193739 0.67 0.615956
Target:  5'- gCCGCCCgcggcuucggcgagcGAcCGCCgGCCCCGcucgcuCGCCc -3'
miRNA:   3'- -GGCGGG---------------CU-GCGGaCGGGGCauc---GCGG- -5'
11056 3' -63.5 NC_002794.1 + 193702 0.66 0.687571
Target:  5'- -aGUCCGAuucccccuCGCCcGCCCCGccGGUGUCc -3'
miRNA:   3'- ggCGGGCU--------GCGGaCGGGGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 193398 0.68 0.555979
Target:  5'- uCCGCCUcGCGCUcGCCuCCGccGcCGCCg -3'
miRNA:   3'- -GGCGGGcUGCGGaCGG-GGCauC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 193148 0.7 0.43254
Target:  5'- gUGCCCGuacaGCGCCUccagcagcaccaGCCCgCGccGCGCCa -3'
miRNA:   3'- gGCGGGC----UGCGGA------------CGGG-GCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 192998 0.68 0.555979
Target:  5'- cUCGCCCGGCGUgUGC-----AGCGCCa -3'
miRNA:   3'- -GGCGGGCUGCGgACGgggcaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 191521 0.67 0.61218
Target:  5'- gCGCCgGGCGUCgGCCC----GCGCCu -3'
miRNA:   3'- gGCGGgCUGCGGaCGGGgcauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 191035 0.69 0.48368
Target:  5'- -aGCCgGACGCaccaguUGCCCgG-GGCGCCc -3'
miRNA:   3'- ggCGGgCUGCGg-----ACGGGgCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 190739 0.66 0.649974
Target:  5'- gCGCCCGcCGCC-GUCUCGacgggGGCGgCg -3'
miRNA:   3'- gGCGGGCuGCGGaCGGGGCa----UCGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.