miRNA display CGI


Results 21 - 40 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 190643 0.72 0.345449
Target:  5'- -aGCCCGGCGUgUGCaggaucacgucgcgCCCGccGCGCCg -3'
miRNA:   3'- ggCGGGCUGCGgACG--------------GGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 190469 0.77 0.175161
Target:  5'- gCGCCCGACGCCcacgggUGCCCCa---CGCCg -3'
miRNA:   3'- gGCGGGCUGCGG------ACGGGGcaucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 190201 0.66 0.649974
Target:  5'- gCGCuCCaGCGCCgcgcGCaCCCGccgGGCGCUc -3'
miRNA:   3'- gGCG-GGcUGCGGa---CG-GGGCa--UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 190114 0.67 0.61218
Target:  5'- gCCGUCCG-CGCCgaaGCggUCCGc-GCGCCg -3'
miRNA:   3'- -GGCGGGCuGCGGa--CG--GGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 189877 0.67 0.631075
Target:  5'- gCCGCCgacCGGC-CCgcucggGCCcgCCGUcAGCGCCg -3'
miRNA:   3'- -GGCGG---GCUGcGGa-----CGG--GGCA-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 189567 0.72 0.333484
Target:  5'- cCCGCUCGGuCgGCCgGCCCgGgccGGCGCCc -3'
miRNA:   3'- -GGCGGGCU-G-CGGaCGGGgCa--UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 189446 0.68 0.568988
Target:  5'- gCGCCCGaaagucggccagcacGCGCCgaaagGCCgCG-GGCGUCg -3'
miRNA:   3'- gGCGGGC---------------UGCGGa----CGGgGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 189380 0.67 0.602748
Target:  5'- gCCGCUCGcCGCUgugcucgGCCaCGUAGUccGCCa -3'
miRNA:   3'- -GGCGGGCuGCGGa------CGGgGCAUCG--CGG- -5'
11056 3' -63.5 NC_002794.1 + 188776 0.74 0.26347
Target:  5'- -aGCCCGgugcagcgguaGCgGCCgGCCCCGccgAGCGCCg -3'
miRNA:   3'- ggCGGGC-----------UG-CGGaCGGGGCa--UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 188586 0.69 0.510318
Target:  5'- aCGCCCGcCGCUccacgGCCgCCuu-GCGCCg -3'
miRNA:   3'- gGCGGGCuGCGGa----CGG-GGcauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 188506 0.7 0.457728
Target:  5'- gCGCUCGACGUUgaaaaagGCCCCGaucucgaAGCGCa -3'
miRNA:   3'- gGCGGGCUGCGGa------CGGGGCa------UCGCGg -5'
11056 3' -63.5 NC_002794.1 + 188338 0.72 0.354804
Target:  5'- gCCGCCggCGGCGCCgucGCgCCCGUccggccggcGGCgGCCg -3'
miRNA:   3'- -GGCGG--GCUGCGGa--CG-GGGCA---------UCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 188021 0.66 0.649974
Target:  5'- cCCGUCuCGGCGCCcucgccGUCCCGgacGCGgCg -3'
miRNA:   3'- -GGCGG-GCUGCGGa-----CGGGGCau-CGCgG- -5'
11056 3' -63.5 NC_002794.1 + 187908 0.73 0.287452
Target:  5'- gCCGCUCGccCGCCggGCCCCGccGCGaCCg -3'
miRNA:   3'- -GGCGGGCu-GCGGa-CGGGGCauCGC-GG- -5'
11056 3' -63.5 NC_002794.1 + 187605 0.71 0.400251
Target:  5'- aCGCCCGGCGUC-GCCCag-AGcCGCUg -3'
miRNA:   3'- gGCGGGCUGCGGaCGGGgcaUC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 187539 0.69 0.474949
Target:  5'- gCCGCCgCGAcCGCCgccaccGCCgCCGUcGgGCCc -3'
miRNA:   3'- -GGCGG-GCU-GCGGa-----CGG-GGCAuCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 187459 0.71 0.416204
Target:  5'- gCCGCUCGGCGUC-GCUCgGcgcGCGCCg -3'
miRNA:   3'- -GGCGGGCUGCGGaCGGGgCau-CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 187135 0.66 0.649974
Target:  5'- cCCGCCCGuaGCC-GCCCagGUacacGGCGCa -3'
miRNA:   3'- -GGCGGGCugCGGaCGGGg-CA----UCGCGg -5'
11056 3' -63.5 NC_002794.1 + 186720 0.67 0.631075
Target:  5'- -aGCCCGuCGCugcuauagCUGCCCacc-GCGCCg -3'
miRNA:   3'- ggCGGGCuGCG--------GACGGGgcauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 186653 0.67 0.640528
Target:  5'- gUCGgCCGcGCGCa--CCCCGUacacGGCGCCc -3'
miRNA:   3'- -GGCgGGC-UGCGgacGGGGCA----UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.