miRNA display CGI


Results 41 - 60 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 186358 0.7 0.466297
Target:  5'- gUGCCCGAccagcCGCCgccGCCgCCGUcGuCGCCg -3'
miRNA:   3'- gGCGGGCU-----GCGGa--CGG-GGCAuC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 186274 0.67 0.602748
Target:  5'- aCCGCCUGGCGCggcgGCaCCgCGgccaGGCgGCCg -3'
miRNA:   3'- -GGCGGGCUGCGga--CG-GG-GCa---UCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 186090 0.69 0.510318
Target:  5'- uUCGCCgGGCGCUUcGUCgCCGUcGcCGCCg -3'
miRNA:   3'- -GGCGGgCUGCGGA-CGG-GGCAuC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 185560 0.7 0.457728
Target:  5'- gCGCCCcGC-CCUGCCgCGgcagGGCGCg -3'
miRNA:   3'- gGCGGGcUGcGGACGGgGCa---UCGCGg -5'
11056 3' -63.5 NC_002794.1 + 185412 0.66 0.678214
Target:  5'- -gGCCCGAcCGCCgucgaCUCGacgcGGCGCCa -3'
miRNA:   3'- ggCGGGCU-GCGGacg--GGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 185345 0.68 0.537549
Target:  5'- aCCGCUCGcGCGCC-GCCgCG-AGCggGCCg -3'
miRNA:   3'- -GGCGGGC-UGCGGaCGGgGCaUCG--CGG- -5'
11056 3' -63.5 NC_002794.1 + 185259 0.67 0.593335
Target:  5'- gCGCCagcgGACGCCgccgGCCgaGUGGgcCGCCg -3'
miRNA:   3'- gGCGGg---CUGCGGa---CGGggCAUC--GCGG- -5'
11056 3' -63.5 NC_002794.1 + 184550 0.7 0.457728
Target:  5'- gCCGCCUcuucgGACGCCUcacgcGCCgCCGcGGCGgCg -3'
miRNA:   3'- -GGCGGG-----CUGCGGA-----CGG-GGCaUCGCgG- -5'
11056 3' -63.5 NC_002794.1 + 184500 0.72 0.340485
Target:  5'- aCGCCCGggcgGCGCggGCCCCGcgcgcGGCGCg -3'
miRNA:   3'- gGCGGGC----UGCGgaCGGGGCa----UCGCGg -5'
11056 3' -63.5 NC_002794.1 + 184291 0.67 0.61218
Target:  5'- cCCGgCCGcCGCCU-CCCCGUcccagagcacGGCuCCg -3'
miRNA:   3'- -GGCgGGCuGCGGAcGGGGCA----------UCGcGG- -5'
11056 3' -63.5 NC_002794.1 + 183989 0.68 0.545817
Target:  5'- uCCGCCaCcGCGCCcGCCaCCGUguccaccaucgccGGcCGCCa -3'
miRNA:   3'- -GGCGG-GcUGCGGaCGG-GGCA-------------UC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 183941 0.66 0.668823
Target:  5'- aCCGCCaCGaACGUCgacgcgGuCCCCGUcacgcuGCGCUc -3'
miRNA:   3'- -GGCGG-GC-UGCGGa-----C-GGGGCAu-----CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 183653 0.74 0.257734
Target:  5'- gCCGCCUucuccGCGCCgGgCCCG-AGCGCCg -3'
miRNA:   3'- -GGCGGGc----UGCGGaCgGGGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 183545 0.69 0.510318
Target:  5'- uCCGCCCGGgGacaCUGCgCgCCG-AGcCGCCg -3'
miRNA:   3'- -GGCGGGCUgCg--GACG-G-GGCaUC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 183439 0.72 0.347592
Target:  5'- gCGggaCCGGCGCCcGCCaCCGccGGCGCCc -3'
miRNA:   3'- gGCg--GGCUGCGGaCGG-GGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 183360 0.71 0.377067
Target:  5'- gCGCCgGACcccaggucccgGCCgUGCCCCGUccCGCCg -3'
miRNA:   3'- gGCGGgCUG-----------CGG-ACGGGGCAucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 183120 0.66 0.687571
Target:  5'- gUGUUCGGCGgCgGCuCCCGUAcGCGCa -3'
miRNA:   3'- gGCGGGCUGCgGaCG-GGGCAU-CGCGg -5'
11056 3' -63.5 NC_002794.1 + 182991 0.72 0.340485
Target:  5'- aCGgCCGGCGCUUcgccgcgggcGCCCCGcgcGCGCCc -3'
miRNA:   3'- gGCgGGCUGCGGA----------CGGGGCau-CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 181749 0.66 0.678214
Target:  5'- gCGgCCGGCcaGCCcGCUgacgCCGaUGGCGCCg -3'
miRNA:   3'- gGCgGGCUG--CGGaCGG----GGC-AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 181523 0.71 0.392422
Target:  5'- gUCGUCCGuuCGCCcGCCgCCGgcGgGCCg -3'
miRNA:   3'- -GGCGGGCu-GCGGaCGG-GGCauCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.