miRNA display CGI


Results 61 - 80 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 181451 0.7 0.424325
Target:  5'- gCCGCCCggagGACGUCUuaCCCGcgccgAGuCGCCa -3'
miRNA:   3'- -GGCGGG----CUGCGGAcgGGGCa----UC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 181398 0.68 0.574587
Target:  5'- uUCGCCCGG-GCCgGCCgCCGccacCGCCa -3'
miRNA:   3'- -GGCGGGCUgCGGaCGG-GGCauc-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 180838 0.66 0.646196
Target:  5'- -aGCCCGGCGUCaccgucgucuacgGCCUCGUcggaGGCGgCg -3'
miRNA:   3'- ggCGGGCUGCGGa------------CGGGGCA----UCGCgG- -5'
11056 3' -63.5 NC_002794.1 + 179103 0.67 0.621624
Target:  5'- aCCGUCCGGuCGuCCgcgGUCCgGgcGCGCg -3'
miRNA:   3'- -GGCGGGCU-GC-GGa--CGGGgCauCGCGg -5'
11056 3' -63.5 NC_002794.1 + 178836 0.66 0.678214
Target:  5'- cCCGCggGucuCGCgUGCCCCGgaccgAGcCGCCc -3'
miRNA:   3'- -GGCGggCu--GCGgACGGGGCa----UC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 153392 0.68 0.546739
Target:  5'- uCUGUCCGAuCGCgagCUGUCgCG-AGCGCCg -3'
miRNA:   3'- -GGCGGGCU-GCG---GACGGgGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 152578 0.68 0.546739
Target:  5'- aCCGCCgCGGCgGCCgccacGuCCCUGcGGCGCg -3'
miRNA:   3'- -GGCGG-GCUG-CGGa----C-GGGGCaUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 151948 0.71 0.400251
Target:  5'- gCCGCCCgcGACGacgGCCCCG-GGUGCUc -3'
miRNA:   3'- -GGCGGG--CUGCggaCGGGGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 151877 0.66 0.659408
Target:  5'- -aGCCCGugGaagugGCCCuCGauucGGCGCCc -3'
miRNA:   3'- ggCGGGCugCgga--CGGG-GCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 151338 0.66 0.687571
Target:  5'- uCCuCCgCGAcCGCCUGCaaCUCGgcuUGGCGCCc -3'
miRNA:   3'- -GGcGG-GCU-GCGGACG--GGGC---AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 150564 0.73 0.29371
Target:  5'- gCGCUgGAgcucaucaaCGCCUGCCCUcgGGCGCCc -3'
miRNA:   3'- gGCGGgCU---------GCGGACGGGGcaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 149705 0.74 0.26347
Target:  5'- gCCGCCUGGCgggugggccGCCUGCCUCGcUAcggcGUGCCg -3'
miRNA:   3'- -GGCGGGCUG---------CGGACGGGGC-AU----CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 149227 0.68 0.583946
Target:  5'- -aGCgaGGCGCC-GCCgCCGUcgccggggucgcGGCGCCa -3'
miRNA:   3'- ggCGggCUGCGGaCGG-GGCA------------UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 145965 0.68 0.546739
Target:  5'- gCGCCCagcGCGCCcagcgcGCCCag-AGCGCCc -3'
miRNA:   3'- gGCGGGc--UGCGGa-----CGGGgcaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 145853 0.66 0.649974
Target:  5'- aCGCUCGACGa--GCCgCCG-AGgGCCg -3'
miRNA:   3'- gGCGGGCUGCggaCGG-GGCaUCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 145745 0.66 0.678214
Target:  5'- gCGCCggcauCGACGgC-GaCCCCGagcgAGCGCCa -3'
miRNA:   3'- gGCGG-----GCUGCgGaC-GGGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 145527 0.76 0.205874
Target:  5'- gCCgGCCCGAgCGCCUcgggcGCCCCG-AGCgGCCc -3'
miRNA:   3'- -GG-CGGGCU-GCGGA-----CGGGGCaUCG-CGG- -5'
11056 3' -63.5 NC_002794.1 + 145389 0.69 0.491603
Target:  5'- uCCGCUCGguggcGCGCCgcgcgGCCUuaaagcgCGgcGCGCCg -3'
miRNA:   3'- -GGCGGGC-----UGCGGa----CGGG-------GCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 144984 0.68 0.583946
Target:  5'- gUCGCgaCCGGCGCCggGCgUCCGccUGGCGCa -3'
miRNA:   3'- -GGCG--GGCUGCGGa-CG-GGGC--AUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 144898 0.71 0.384694
Target:  5'- aCGCUCG-CGCCgcuggGCCCCGc--CGCCg -3'
miRNA:   3'- gGCGGGCuGCGGa----CGGGGCaucGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.