miRNA display CGI


Results 81 - 100 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 144419 0.67 0.620679
Target:  5'- -gGCCCGAgCGcCCUGCUgcgccgagugcagCCGUGcGCGCa -3'
miRNA:   3'- ggCGGGCU-GC-GGACGG-------------GGCAU-CGCGg -5'
11056 3' -63.5 NC_002794.1 + 144067 0.7 0.444195
Target:  5'- cUCGCCCGACgcguccgacgaggugGCCuggcUGUCCCGcuuguGCGCCc -3'
miRNA:   3'- -GGCGGGCUG---------------CGG----ACGGGGCau---CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 143838 0.73 0.298153
Target:  5'- gCCgGUCCGACGCCUccggccaggcgaucGCCgCCGcGGCGUCa -3'
miRNA:   3'- -GG-CGGGCUGCGGA--------------CGG-GGCaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 143741 0.68 0.583946
Target:  5'- cCCGCCgGACGC--GCCgCCGgggGGCuCCg -3'
miRNA:   3'- -GGCGGgCUGCGgaCGG-GGCa--UCGcGG- -5'
11056 3' -63.5 NC_002794.1 + 143706 0.7 0.449244
Target:  5'- uUGCCCacCGCggGCCCCGgcgGGCGUCg -3'
miRNA:   3'- gGCGGGcuGCGgaCGGGGCa--UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 143272 0.68 0.528412
Target:  5'- cCCgGCCCGGCGCCgGCCgCucGGgGUCg -3'
miRNA:   3'- -GG-CGGGCUGCGGaCGGgGcaUCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 142901 0.66 0.69689
Target:  5'- gUGCCCGGCGUC--CUCCG-GGgGCCg -3'
miRNA:   3'- gGCGGGCUGCGGacGGGGCaUCgCGG- -5'
11056 3' -63.5 NC_002794.1 + 141317 0.66 0.659408
Target:  5'- aCgGCaCCGGCGUCgGCUCgGUGGCGa- -3'
miRNA:   3'- -GgCG-GGCUGCGGaCGGGgCAUCGCgg -5'
11056 3' -63.5 NC_002794.1 + 138935 0.66 0.668823
Target:  5'- uCUGCCgGuGCGCCc-CCaCCGUGGCGUg -3'
miRNA:   3'- -GGCGGgC-UGCGGacGG-GGCAUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 137896 0.67 0.631075
Target:  5'- cCCGCCagGACGgUacacagGuCCCCGUGGCGUUc -3'
miRNA:   3'- -GGCGGg-CUGCgGa-----C-GGGGCAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 137639 0.68 0.528412
Target:  5'- aCGUCCuggcgGGCGCCggGCCUCc-GGCGCCg -3'
miRNA:   3'- gGCGGG-----CUGCGGa-CGGGGcaUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 137465 0.69 0.519334
Target:  5'- uCCGCCgUGuCGgCgGCCUCGUagagcAGCGCCa -3'
miRNA:   3'- -GGCGG-GCuGCgGaCGGGGCA-----UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 137403 0.66 0.668823
Target:  5'- uCUGUCCGGCGuCCgcggacGCCgCGgagaccGCGCCg -3'
miRNA:   3'- -GGCGGGCUGC-GGa-----CGGgGCau----CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 137122 0.71 0.407382
Target:  5'- cCCGCCCGAacugucguccgucCGCCcGCCCgGccGGcCGCCc -3'
miRNA:   3'- -GGCGGGCU-------------GCGGaCGGGgCa-UC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 136706 0.69 0.474949
Target:  5'- gCGCCCGgugcagGCGCCgGUCCCG--GCGUCc -3'
miRNA:   3'- gGCGGGC------UGCGGaCGGGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 136014 0.7 0.466297
Target:  5'- uCCGCUgGucacuCGCgUGCCCCGUuccGCGUUa -3'
miRNA:   3'- -GGCGGgCu----GCGgACGGGGCAu--CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 135976 0.68 0.546739
Target:  5'- -aGCCCGGCGCCggGCUCCucuuCGCUg -3'
miRNA:   3'- ggCGGGCUGCGGa-CGGGGcaucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 135504 0.71 0.400251
Target:  5'- -gGCCCGAUGCCcGCacaCCGgacgcucgcGCGCCg -3'
miRNA:   3'- ggCGGGCUGCGGaCGg--GGCau-------CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 134875 0.68 0.565263
Target:  5'- -aGCaCCGACGCCUGCgCgCGUuguaucggacGCGCUc -3'
miRNA:   3'- ggCG-GGCUGCGGACG-GgGCAu---------CGCGG- -5'
11056 3' -63.5 NC_002794.1 + 131555 0.68 0.537549
Target:  5'- cUCGCCCGugGUCggcgcgGCgCCCGUcuugacGGCcucGCCu -3'
miRNA:   3'- -GGCGGGCugCGGa-----CG-GGGCA------UCG---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.