miRNA display CGI


Results 61 - 80 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 3' -63.5 NC_002794.1 + 193702 0.66 0.687571
Target:  5'- -aGUCCGAuucccccuCGCCcGCCCCGccGGUGUCc -3'
miRNA:   3'- ggCGGGCU--------GCGGaCGGGGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 69819 0.66 0.687571
Target:  5'- gCCGCgaCCGGCGUCcGCCCgGUc-CGCUg -3'
miRNA:   3'- -GGCG--GGCUGCGGaCGGGgCAucGCGG- -5'
11056 3' -63.5 NC_002794.1 + 185412 0.66 0.678214
Target:  5'- -gGCCCGAcCGCCgucgaCUCGacgcGGCGCCa -3'
miRNA:   3'- ggCGGGCU-GCGGacg--GGGCa---UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 124143 0.66 0.678214
Target:  5'- gCGCCCGGgagcggucucCGCgggGCCCgGgagAGCGUCg -3'
miRNA:   3'- gGCGGGCU----------GCGga-CGGGgCa--UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 178836 0.66 0.678214
Target:  5'- cCCGCggGucuCGCgUGCCCCGgaccgAGcCGCCc -3'
miRNA:   3'- -GGCGggCu--GCGgACGGGGCa----UC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 82936 0.66 0.678214
Target:  5'- gCCGCuCCGACuCCaGgCCCGccGCGCa -3'
miRNA:   3'- -GGCG-GGCUGcGGaCgGGGCauCGCGg -5'
11056 3' -63.5 NC_002794.1 + 95037 0.66 0.678214
Target:  5'- cUCGCCgGugGCg-GCgCCCGaGGCGUa -3'
miRNA:   3'- -GGCGGgCugCGgaCG-GGGCaUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 106829 0.66 0.678214
Target:  5'- gUCGUCCGGCGCUcGgCCUGcGGCuccGCCu -3'
miRNA:   3'- -GGCGGGCUGCGGaCgGGGCaUCG---CGG- -5'
11056 3' -63.5 NC_002794.1 + 108122 0.66 0.678214
Target:  5'- aCGCCgCGcuaucagaACGCCggcuggauucGCCgCCGggAGCGCCg -3'
miRNA:   3'- gGCGG-GC--------UGCGGa---------CGG-GGCa-UCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 66713 0.66 0.677276
Target:  5'- gCGCCCGGCacgGCCgccGCCaCCGccggcggUGGCGgCg -3'
miRNA:   3'- gGCGGGCUG---CGGa--CGG-GGC-------AUCGCgG- -5'
11056 3' -63.5 NC_002794.1 + 181749 0.66 0.678214
Target:  5'- gCGgCCGGCcaGCCcGCUgacgCCGaUGGCGCCg -3'
miRNA:   3'- gGCgGGCUG--CGGaCGG----GGC-AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 118388 0.66 0.678214
Target:  5'- gCCGCUCGGCGgC-GCucagCCCGUAGCaCUg -3'
miRNA:   3'- -GGCGGGCUGCgGaCG----GGGCAUCGcGG- -5'
11056 3' -63.5 NC_002794.1 + 30734 0.66 0.687571
Target:  5'- uCCGCCCGAa--CUGgCCgCGgcUGGCGCg -3'
miRNA:   3'- -GGCGGGCUgcgGACgGG-GC--AUCGCGg -5'
11056 3' -63.5 NC_002794.1 + 151338 0.66 0.687571
Target:  5'- uCCuCCgCGAcCGCCUGCaaCUCGgcuUGGCGCCc -3'
miRNA:   3'- -GGcGG-GCU-GCGGACG--GGGC---AUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 49109 0.66 0.687571
Target:  5'- gCGCUCGGCGuCCUGCaCCG-GGaccgGCCg -3'
miRNA:   3'- gGCGGGCUGC-GGACGgGGCaUCg---CGG- -5'
11056 3' -63.5 NC_002794.1 + 33684 0.66 0.687571
Target:  5'- gCGCUCGcuGCGCCUG-UUCGUGGCgggcgaGCCg -3'
miRNA:   3'- gGCGGGC--UGCGGACgGGGCAUCG------CGG- -5'
11056 3' -63.5 NC_002794.1 + 16534 0.66 0.687571
Target:  5'- gCCGucCCCGGCGU---CCCCGgcGuCGCCa -3'
miRNA:   3'- -GGC--GGGCUGCGgacGGGGCauC-GCGG- -5'
11056 3' -63.5 NC_002794.1 + 66646 0.66 0.681961
Target:  5'- uCCGUCCGggggcaucgguaacgGCGUCguggucaacgGCCCCG--GCGCCc -3'
miRNA:   3'- -GGCGGGC---------------UGCGGa---------CGGGGCauCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 12921 0.66 0.686637
Target:  5'- aCCGCCuggccguCGACGaCCUGgcggaCUUCGUGGCGUUg -3'
miRNA:   3'- -GGCGG-------GCUGC-GGAC-----GGGGCAUCGCGG- -5'
11056 3' -63.5 NC_002794.1 + 145745 0.66 0.678214
Target:  5'- gCGCCggcauCGACGgC-GaCCCCGagcgAGCGCCa -3'
miRNA:   3'- gGCGG-----GCUGCgGaC-GGGGCa---UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.