miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11056 5' -58.2 NC_002794.1 + 106987 0.66 0.881979
Target:  5'- -cGGCACGGCGGUGGCggCGcuGGcCg -3'
miRNA:   3'- ucCUGUGCUGCCACCGgaGUucCCaG- -5'
11056 5' -58.2 NC_002794.1 + 130219 0.66 0.881979
Target:  5'- aGGcGAC-CGACGGgcuccugagaGGCCUCGAGGa-- -3'
miRNA:   3'- -UC-CUGuGCUGCCa---------CCGGAGUUCCcag -5'
11056 5' -58.2 NC_002794.1 + 141426 0.66 0.881979
Target:  5'- cGGGgGCGGCGGgGGCgC-CGGGGG-Cg -3'
miRNA:   3'- uCCUgUGCUGCCaCCG-GaGUUCCCaG- -5'
11056 5' -58.2 NC_002794.1 + 149628 0.66 0.879928
Target:  5'- uGGGACGCGcgauacgcguggauGCGGUucgccgaggaGGCCgagCGGGGG-Cg -3'
miRNA:   3'- -UCCUGUGC--------------UGCCA----------CCGGa--GUUCCCaG- -5'
11056 5' -58.2 NC_002794.1 + 178236 0.66 0.875069
Target:  5'- cGGAUgggACGACGa-GGCCgUCGAGGGa- -3'
miRNA:   3'- uCCUG---UGCUGCcaCCGG-AGUUCCCag -5'
11056 5' -58.2 NC_002794.1 + 563 0.66 0.875069
Target:  5'- -cGGCGCGGCGGUGGCa-----GGUCu -3'
miRNA:   3'- ucCUGUGCUGCCACCGgaguucCCAG- -5'
11056 5' -58.2 NC_002794.1 + 89334 0.66 0.875069
Target:  5'- gGGGACGCGGCGGcGaGaCCUcCGAGGa-- -3'
miRNA:   3'- -UCCUGUGCUGCCaC-C-GGA-GUUCCcag -5'
11056 5' -58.2 NC_002794.1 + 133378 0.66 0.874366
Target:  5'- cGGuCGucgucCGGCGGUcaugaucGGCC-CGGGGGUCg -3'
miRNA:   3'- uCCuGU-----GCUGCCA-------CCGGaGUUCCCAG- -5'
11056 5' -58.2 NC_002794.1 + 183154 0.66 0.867954
Target:  5'- cGGACACG-CGGccgGGCUgccCGAGccGGUCg -3'
miRNA:   3'- uCCUGUGCuGCCa--CCGGa--GUUC--CCAG- -5'
11056 5' -58.2 NC_002794.1 + 179211 0.66 0.86064
Target:  5'- cGGcGGCACGACGGacgUGGCCcagaugCAAcaGGUCg -3'
miRNA:   3'- -UC-CUGUGCUGCC---ACCGGa-----GUUc-CCAG- -5'
11056 5' -58.2 NC_002794.1 + 138966 0.67 0.845435
Target:  5'- -cGACGCGGCGGacggguUGGCCUgGcGGGcCu -3'
miRNA:   3'- ucCUGUGCUGCC------ACCGGAgUuCCCaG- -5'
11056 5' -58.2 NC_002794.1 + 50574 0.67 0.843091
Target:  5'- -cGACACGGCgugcgcggcggcugGGUGGCCggcgcCGGGGGg- -3'
miRNA:   3'- ucCUGUGCUG--------------CCACCGGa----GUUCCCag -5'
11056 5' -58.2 NC_002794.1 + 112731 0.67 0.829502
Target:  5'- cAGGACGCGgaaggcGCGGUGcuCCgcggCGgcGGGGUCg -3'
miRNA:   3'- -UCCUGUGC------UGCCACc-GGa---GU--UCCCAG- -5'
11056 5' -58.2 NC_002794.1 + 10358 0.67 0.827052
Target:  5'- cGGACugcuCGACGGUGGauCCgcacuagccgacgaUCGAGGGg- -3'
miRNA:   3'- uCCUGu---GCUGCCACC--GG--------------AGUUCCCag -5'
11056 5' -58.2 NC_002794.1 + 156475 0.67 0.821278
Target:  5'- cGGGGgACGACGGggcGGCUUUAccGGUUu -3'
miRNA:   3'- -UCCUgUGCUGCCa--CCGGAGUucCCAG- -5'
11056 5' -58.2 NC_002794.1 + 17315 0.67 0.812893
Target:  5'- cGGugACGACGGUcaGGCCgcc-GGcGUCc -3'
miRNA:   3'- uCCugUGCUGCCA--CCGGaguuCC-CAG- -5'
11056 5' -58.2 NC_002794.1 + 95771 0.67 0.812893
Target:  5'- cGGcCGCGACGGcGGCCggggCGAGaGG-Cg -3'
miRNA:   3'- uCCuGUGCUGCCaCCGGa---GUUC-CCaG- -5'
11056 5' -58.2 NC_002794.1 + 107883 0.67 0.812893
Target:  5'- aGGcGGCGCGGCGGgugcGGCUgcc-GGGUCu -3'
miRNA:   3'- -UC-CUGUGCUGCCa---CCGGaguuCCCAG- -5'
11056 5' -58.2 NC_002794.1 + 120995 0.67 0.804353
Target:  5'- ----aGCGGCGGcgGGCCauggcCGAGGGUCg -3'
miRNA:   3'- uccugUGCUGCCa-CCGGa----GUUCCCAG- -5'
11056 5' -58.2 NC_002794.1 + 116840 0.68 0.793033
Target:  5'- cGGGACGCGcgguggaucuucauGCGGcGGCCgugucgcgcucgUCAGGGGg- -3'
miRNA:   3'- -UCCUGUGC--------------UGCCaCCGG------------AGUUCCCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.