miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 3' -55.1 NC_002794.1 + 121405 0.66 0.958377
Target:  5'- -gGCGCC-GGGACc-GCG-ACCGUCGc -3'
miRNA:   3'- gaCGUGGuUCCUGaaCGCgUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 112320 0.66 0.954594
Target:  5'- -gGCGCCGAcGGCggggaGCGCGCCGg-- -3'
miRNA:   3'- gaCGUGGUUcCUGaa---CGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 182181 0.66 0.954594
Target:  5'- gCUGUACCAuaacGGGGCcucgGCGcCGgCGUCGc -3'
miRNA:   3'- -GACGUGGU----UCCUGaa--CGC-GUgGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 126602 0.66 0.950585
Target:  5'- -aGCGCCGAGG-CcgGCGCcgaCGUCGc -3'
miRNA:   3'- gaCGUGGUUCCuGaaCGCGug-GCAGU- -5'
11061 3' -55.1 NC_002794.1 + 23974 0.66 0.950585
Target:  5'- -aGCGgCGAGG-CcgGCGcCACCGUCGc -3'
miRNA:   3'- gaCGUgGUUCCuGaaCGC-GUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 150593 0.66 0.950585
Target:  5'- -gGCGcCCGAGGACggccGgGCGCCGg-- -3'
miRNA:   3'- gaCGU-GGUUCCUGaa--CgCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 143556 0.66 0.950585
Target:  5'- -aGCACgGuGGcccaGCcgUGCGCGCCGUCc -3'
miRNA:   3'- gaCGUGgUuCC----UGa-ACGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 108846 0.66 0.950585
Target:  5'- -aGCgaACCGGGuGugUUgGCGCGCgGUCAc -3'
miRNA:   3'- gaCG--UGGUUC-CugAA-CGCGUGgCAGU- -5'
11061 3' -55.1 NC_002794.1 + 112589 0.66 0.946346
Target:  5'- gCUGCGCCAGGGcccguucgaACgccuccaccUGCGCGUCGUCc -3'
miRNA:   3'- -GACGUGGUUCC---------UGa--------ACGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 75173 0.66 0.941875
Target:  5'- --aCACCAAGGugUUGaucaaCGCCGUCc -3'
miRNA:   3'- gacGUGGUUCCugAACgc---GUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 20433 0.66 0.937169
Target:  5'- -cGCGCCgGAGGAC--GUGCACCGc-- -3'
miRNA:   3'- gaCGUGG-UUCCUGaaCGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 66011 0.66 0.937169
Target:  5'- -gGCACCGAGG-CggccGCGgucguCGCCGUCGu -3'
miRNA:   3'- gaCGUGGUUCCuGaa--CGC-----GUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 101430 0.66 0.936685
Target:  5'- gCUGCGcgacgauCCGGGGACgccgGCGCGCCc--- -3'
miRNA:   3'- -GACGU-------GGUUCCUGaa--CGCGUGGcagu -5'
11061 3' -55.1 NC_002794.1 + 151229 0.67 0.932226
Target:  5'- uUGgGCC-AGGGCUaccgGCuCACCGUCGu -3'
miRNA:   3'- gACgUGGuUCCUGAa---CGcGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 135515 0.67 0.932226
Target:  5'- -cGCACaccGGACgcucGCGCGCCGcUCGg -3'
miRNA:   3'- gaCGUGguuCCUGaa--CGCGUGGC-AGU- -5'
11061 3' -55.1 NC_002794.1 + 34445 0.67 0.932226
Target:  5'- cCUGCAgCucuucuggGAGGACgaguaccUGCGCACCuUCAa -3'
miRNA:   3'- -GACGUgG--------UUCCUGa------ACGCGUGGcAGU- -5'
11061 3' -55.1 NC_002794.1 + 186757 0.67 0.932226
Target:  5'- -cGUACCAGGGGCaggccagGCGCuCCGaCAc -3'
miRNA:   3'- gaCGUGGUUCCUGaa-----CGCGuGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 139470 0.67 0.929147
Target:  5'- gUGCGCCAGgacggugguguagauGGGCgcggGCGCGCUG-CAg -3'
miRNA:   3'- gACGUGGUU---------------CCUGaa--CGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 102147 0.67 0.927046
Target:  5'- gUGCGCUucGGcgGCgUGCGCGCCGg-- -3'
miRNA:   3'- gACGUGGuuCC--UGaACGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 98937 0.67 0.927046
Target:  5'- -cGCgGCCGggaaGGGGCUggggcucgugcUGgGCGCCGUCGg -3'
miRNA:   3'- gaCG-UGGU----UCCUGA-----------ACgCGUGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.