miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 3' -55.1 NC_002794.1 + 98937 0.67 0.927046
Target:  5'- -cGCgGCCGggaaGGGGCUggggcucgugcUGgGCGCCGUCGg -3'
miRNA:   3'- gaCG-UGGU----UCCUGA-----------ACgCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 102147 0.67 0.927046
Target:  5'- gUGCGCUucGGcgGCgUGCGCGCCGg-- -3'
miRNA:   3'- gACGUGGuuCC--UGaACGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 117854 0.67 0.927046
Target:  5'- -aGCGCgaCGGGGGCUgGCGCGCCa--- -3'
miRNA:   3'- gaCGUG--GUUCCUGAaCGCGUGGcagu -5'
11061 3' -55.1 NC_002794.1 + 139470 0.67 0.929147
Target:  5'- gUGCGCCAGgacggugguguagauGGGCgcggGCGCGCUG-CAg -3'
miRNA:   3'- gACGUGGUU---------------CCUGaa--CGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 151229 0.67 0.932226
Target:  5'- uUGgGCC-AGGGCUaccgGCuCACCGUCGu -3'
miRNA:   3'- gACgUGGuUCCUGAa---CGcGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 135515 0.67 0.932226
Target:  5'- -cGCACaccGGACgcucGCGCGCCGcUCGg -3'
miRNA:   3'- gaCGUGguuCCUGaa--CGCGUGGC-AGU- -5'
11061 3' -55.1 NC_002794.1 + 34445 0.67 0.932226
Target:  5'- cCUGCAgCucuucuggGAGGACgaguaccUGCGCACCuUCAa -3'
miRNA:   3'- -GACGUgG--------UUCCUGa------ACGCGUGGcAGU- -5'
11061 3' -55.1 NC_002794.1 + 186757 0.67 0.932226
Target:  5'- -cGUACCAGGGGCaggccagGCGCuCCGaCAc -3'
miRNA:   3'- gaCGUGGUUCCUGaa-----CGCGuGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 158253 0.68 0.869898
Target:  5'- -cGCACgGAGGAUUUGaaggcuCGCACCG-CGa -3'
miRNA:   3'- gaCGUGgUUCCUGAAC------GCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 182549 0.68 0.877153
Target:  5'- aCUGCGCCGcGGcCg---GCACCGUCAc -3'
miRNA:   3'- -GACGUGGUuCCuGaacgCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 120822 0.68 0.868421
Target:  5'- gCUGCGacacgcucucgaCGGGGGCUaucccUGCGCGgCCGUCGu -3'
miRNA:   3'- -GACGUg-----------GUUCCUGA-----ACGCGU-GGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 123921 0.68 0.88419
Target:  5'- -cGCGCCGGaccugcccccGGGCaccGCGUACCGUCu -3'
miRNA:   3'- gaCGUGGUU----------CCUGaa-CGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 101798 0.68 0.891005
Target:  5'- gCUGCGCCGcuGGuuGGCgcagcgGCGCGCCGUg- -3'
miRNA:   3'- -GACGUGGU--UC--CUGaa----CGCGUGGCAgu -5'
11061 3' -55.1 NC_002794.1 + 24078 0.68 0.897594
Target:  5'- gUGCGCCc-GGGCggGCGuCGCCGUa- -3'
miRNA:   3'- gACGUGGuuCCUGaaCGC-GUGGCAgu -5'
11061 3' -55.1 NC_002794.1 + 182057 0.68 0.891005
Target:  5'- cCUGCGCguAGGGCgccUGCGUcCgGUCGg -3'
miRNA:   3'- -GACGUGguUCCUGa--ACGCGuGgCAGU- -5'
11061 3' -55.1 NC_002794.1 + 19839 0.68 0.903954
Target:  5'- gCUGCACggcuaCGGGGAC-UGCGUgucgcacucgACCGUCu -3'
miRNA:   3'- -GACGUG-----GUUCCUGaACGCG----------UGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 187845 0.69 0.846883
Target:  5'- -cGCGCCGAGGGCUcugcccagccGCGCGCgGcUCGc -3'
miRNA:   3'- gaCGUGGUUCCUGAa---------CGCGUGgC-AGU- -5'
11061 3' -55.1 NC_002794.1 + 14348 0.69 0.854757
Target:  5'- aCUaCACCGAGGAgUcuuaccgcUGCGUGCUGUCGg -3'
miRNA:   3'- -GAcGUGGUUCCUgA--------ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 99805 0.7 0.80475
Target:  5'- -cGCGCCGcGGGCgccgGCGCCGUCGg -3'
miRNA:   3'- gaCGUGGUuCCUGaacgCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 12001 0.7 0.81352
Target:  5'- gCUGCugUguGGACUgaUGUGCGCCGcCGg -3'
miRNA:   3'- -GACGugGuuCCUGA--ACGCGUGGCaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.