miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 3' -55.1 NC_002794.1 + 73072 0.76 0.489435
Target:  5'- -gGCAg-GAGGACggGCGCACCGUCAa -3'
miRNA:   3'- gaCGUggUUCCUGaaCGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 61855 0.75 0.528172
Target:  5'- -cGCGCCccauGGACgacgccGCGCGCCGUCGu -3'
miRNA:   3'- gaCGUGGuu--CCUGaa----CGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 59685 0.74 0.602411
Target:  5'- cCUGCACCc-GGGCUucgcccucacgcuggUGCGCACCGaCAc -3'
miRNA:   3'- -GACGUGGuuCCUGA---------------ACGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 18835 0.73 0.628917
Target:  5'- -gGCGCgGAGGAgaccuCgaGCGCGCCGUCGc -3'
miRNA:   3'- gaCGUGgUUCCU-----GaaCGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 141439 0.72 0.679813
Target:  5'- -gGCGCCGGGGGCgccgggagcgGCGCGgCGUCc -3'
miRNA:   3'- gaCGUGGUUCCUGaa--------CGCGUgGCAGu -5'
11061 3' -55.1 NC_002794.1 + 57062 0.72 0.699958
Target:  5'- cCUGCucaACCugGAGGcCUuaaacacugugcUGCGCACCGUCAa -3'
miRNA:   3'- -GACG---UGG--UUCCuGA------------ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 113737 0.72 0.70995
Target:  5'- aCUGCACCGAccGGACcagGCGCGCgagggUGUCGg -3'
miRNA:   3'- -GACGUGGUU--CCUGaa-CGCGUG-----GCAGU- -5'
11061 3' -55.1 NC_002794.1 + 142477 0.72 0.719876
Target:  5'- -gGCACCGuGGACgcgUGCGgCGCCGgCAg -3'
miRNA:   3'- gaCGUGGUuCCUGa--ACGC-GUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 183547 0.72 0.719876
Target:  5'- -cGC-CCGGGGACacUGCGCGCCGa-- -3'
miRNA:   3'- gaCGuGGUUCCUGa-ACGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 77342 0.71 0.739495
Target:  5'- gCUGCACCucccggAGGGGCacUGCGCgcugACCGUCu -3'
miRNA:   3'- -GACGUGG------UUCCUGa-ACGCG----UGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 82713 0.71 0.758741
Target:  5'- -cGCGCCGAGGACgccGCGcCACCa--- -3'
miRNA:   3'- gaCGUGGUUCCUGaa-CGC-GUGGcagu -5'
11061 3' -55.1 NC_002794.1 + 99805 0.7 0.80475
Target:  5'- -cGCGCCGcGGGCgccgGCGCCGUCGg -3'
miRNA:   3'- gaCGUGGUuCCUGaacgCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 12001 0.7 0.81352
Target:  5'- gCUGCugUguGGACUgaUGUGCGCCGcCGg -3'
miRNA:   3'- -GACGugGuuCCUGA--ACGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 187845 0.69 0.846883
Target:  5'- -cGCGCCGAGGGCUcugcccagccGCGCGCgGcUCGc -3'
miRNA:   3'- gaCGUGGUUCCUGAa---------CGCGUGgC-AGU- -5'
11061 3' -55.1 NC_002794.1 + 14348 0.69 0.854757
Target:  5'- aCUaCACCGAGGAgUcuuaccgcUGCGUGCUGUCGg -3'
miRNA:   3'- -GAcGUGGUUCCUgA--------ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 120822 0.68 0.868421
Target:  5'- gCUGCGacacgcucucgaCGGGGGCUaucccUGCGCGgCCGUCGu -3'
miRNA:   3'- -GACGUg-----------GUUCCUGA-----ACGCGU-GGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 158253 0.68 0.869898
Target:  5'- -cGCACgGAGGAUUUGaaggcuCGCACCG-CGa -3'
miRNA:   3'- gaCGUGgUUCCUGAAC------GCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 182549 0.68 0.877153
Target:  5'- aCUGCGCCGcGGcCg---GCACCGUCAc -3'
miRNA:   3'- -GACGUGGUuCCuGaacgCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 123921 0.68 0.88419
Target:  5'- -cGCGCCGGaccugcccccGGGCaccGCGUACCGUCu -3'
miRNA:   3'- gaCGUGGUU----------CCUGaa-CGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 182057 0.68 0.891005
Target:  5'- cCUGCGCguAGGGCgccUGCGUcCgGUCGg -3'
miRNA:   3'- -GACGUGguUCCUGa--ACGCGuGgCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.