Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11061 | 3' | -55.1 | NC_002794.1 | + | 182057 | 0.68 | 0.891005 |
Target: 5'- cCUGCGCguAGGGCgccUGCGUcCgGUCGg -3' miRNA: 3'- -GACGUGguUCCUGa--ACGCGuGgCAGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 24078 | 0.68 | 0.897594 |
Target: 5'- gUGCGCCc-GGGCggGCGuCGCCGUa- -3' miRNA: 3'- gACGUGGuuCCUGaaCGC-GUGGCAgu -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 19839 | 0.68 | 0.903954 |
Target: 5'- gCUGCACggcuaCGGGGAC-UGCGUgucgcacucgACCGUCu -3' miRNA: 3'- -GACGUG-----GUUCCUGaACGCG----------UGGCAGu -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 8036 | 0.67 | 0.910081 |
Target: 5'- gUGUcCCGAGGAagacGcCGCACCGUCu -3' miRNA: 3'- gACGuGGUUCCUgaa-C-GCGUGGCAGu -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 152234 | 0.67 | 0.910081 |
Target: 5'- -cGCGCCAcGu-CgcGCGCACCGUCGc -3' miRNA: 3'- gaCGUGGUuCcuGaaCGCGUGGCAGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 115044 | 0.67 | 0.915973 |
Target: 5'- gUGCgACCGGGcGGCgggcgGCaGCGCCGUCc -3' miRNA: 3'- gACG-UGGUUC-CUGaa---CG-CGUGGCAGu -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 44225 | 0.67 | 0.921073 |
Target: 5'- -gGCGCCGAGGGCUcgGUGCcgggcggcucgguGCCGggCGg -3' miRNA: 3'- gaCGUGGUUCCUGAa-CGCG-------------UGGCa-GU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 133536 | 0.67 | 0.921628 |
Target: 5'- -gGCcgACCGGGuACgcguUGUGCACCGUCAc -3' miRNA: 3'- gaCG--UGGUUCcUGa---ACGCGUGGCAGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 152105 | 0.67 | 0.921628 |
Target: 5'- --cCGCCGucuGGGGCUUGCuGCGCCGcUCc -3' miRNA: 3'- gacGUGGU---UCCUGAACG-CGUGGC-AGu -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 91817 | 0.67 | 0.922181 |
Target: 5'- gUGCcugACgGAGGACgcgcugaacgacgccUGuCGCACCGUCAa -3' miRNA: 3'- gACG---UGgUUCCUGa--------------AC-GCGUGGCAGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 117854 | 0.67 | 0.927046 |
Target: 5'- -aGCGCgaCGGGGGCUgGCGCGCCa--- -3' miRNA: 3'- gaCGUG--GUUCCUGAaCGCGUGGcagu -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 98937 | 0.67 | 0.927046 |
Target: 5'- -cGCgGCCGggaaGGGGCUggggcucgugcUGgGCGCCGUCGg -3' miRNA: 3'- gaCG-UGGU----UCCUGA-----------ACgCGUGGCAGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 102147 | 0.67 | 0.927046 |
Target: 5'- gUGCGCUucGGcgGCgUGCGCGCCGg-- -3' miRNA: 3'- gACGUGGuuCC--UGaACGCGUGGCagu -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 139470 | 0.67 | 0.929147 |
Target: 5'- gUGCGCCAGgacggugguguagauGGGCgcggGCGCGCUG-CAg -3' miRNA: 3'- gACGUGGUU---------------CCUGaa--CGCGUGGCaGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 186757 | 0.67 | 0.932226 |
Target: 5'- -cGUACCAGGGGCaggccagGCGCuCCGaCAc -3' miRNA: 3'- gaCGUGGUUCCUGaa-----CGCGuGGCaGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 135515 | 0.67 | 0.932226 |
Target: 5'- -cGCACaccGGACgcucGCGCGCCGcUCGg -3' miRNA: 3'- gaCGUGguuCCUGaa--CGCGUGGC-AGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 34445 | 0.67 | 0.932226 |
Target: 5'- cCUGCAgCucuucuggGAGGACgaguaccUGCGCACCuUCAa -3' miRNA: 3'- -GACGUgG--------UUCCUGa------ACGCGUGGcAGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 151229 | 0.67 | 0.932226 |
Target: 5'- uUGgGCC-AGGGCUaccgGCuCACCGUCGu -3' miRNA: 3'- gACgUGGuUCCUGAa---CGcGUGGCAGU- -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 101430 | 0.66 | 0.936685 |
Target: 5'- gCUGCGcgacgauCCGGGGACgccgGCGCGCCc--- -3' miRNA: 3'- -GACGU-------GGUUCCUGaa--CGCGUGGcagu -5' |
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11061 | 3' | -55.1 | NC_002794.1 | + | 20433 | 0.66 | 0.937169 |
Target: 5'- -cGCGCCgGAGGAC--GUGCACCGc-- -3' miRNA: 3'- gaCGUGG-UUCCUGaaCGCGUGGCagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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