miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 3' -55.1 NC_002794.1 + 117854 0.67 0.927046
Target:  5'- -aGCGCgaCGGGGGCUgGCGCGCCa--- -3'
miRNA:   3'- gaCGUG--GUUCCUGAaCGCGUGGcagu -5'
11061 3' -55.1 NC_002794.1 + 91817 0.67 0.922181
Target:  5'- gUGCcugACgGAGGACgcgcugaacgacgccUGuCGCACCGUCAa -3'
miRNA:   3'- gACG---UGgUUCCUGa--------------AC-GCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 152105 0.67 0.921628
Target:  5'- --cCGCCGucuGGGGCUUGCuGCGCCGcUCc -3'
miRNA:   3'- gacGUGGU---UCCUGAACG-CGUGGC-AGu -5'
11061 3' -55.1 NC_002794.1 + 133536 0.67 0.921628
Target:  5'- -gGCcgACCGGGuACgcguUGUGCACCGUCAc -3'
miRNA:   3'- gaCG--UGGUUCcUGa---ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 44225 0.67 0.921073
Target:  5'- -gGCGCCGAGGGCUcgGUGCcgggcggcucgguGCCGggCGg -3'
miRNA:   3'- gaCGUGGUUCCUGAa-CGCG-------------UGGCa-GU- -5'
11061 3' -55.1 NC_002794.1 + 115044 0.67 0.915973
Target:  5'- gUGCgACCGGGcGGCgggcgGCaGCGCCGUCc -3'
miRNA:   3'- gACG-UGGUUC-CUGaa---CG-CGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 152234 0.67 0.910081
Target:  5'- -cGCGCCAcGu-CgcGCGCACCGUCGc -3'
miRNA:   3'- gaCGUGGUuCcuGaaCGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 8036 0.67 0.910081
Target:  5'- gUGUcCCGAGGAagacGcCGCACCGUCu -3'
miRNA:   3'- gACGuGGUUCCUgaa-C-GCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 19839 0.68 0.903954
Target:  5'- gCUGCACggcuaCGGGGAC-UGCGUgucgcacucgACCGUCu -3'
miRNA:   3'- -GACGUG-----GUUCCUGaACGCG----------UGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 24078 0.68 0.897594
Target:  5'- gUGCGCCc-GGGCggGCGuCGCCGUa- -3'
miRNA:   3'- gACGUGGuuCCUGaaCGC-GUGGCAgu -5'
11061 3' -55.1 NC_002794.1 + 182057 0.68 0.891005
Target:  5'- cCUGCGCguAGGGCgccUGCGUcCgGUCGg -3'
miRNA:   3'- -GACGUGguUCCUGa--ACGCGuGgCAGU- -5'
11061 3' -55.1 NC_002794.1 + 101798 0.68 0.891005
Target:  5'- gCUGCGCCGcuGGuuGGCgcagcgGCGCGCCGUg- -3'
miRNA:   3'- -GACGUGGU--UC--CUGaa----CGCGUGGCAgu -5'
11061 3' -55.1 NC_002794.1 + 123921 0.68 0.88419
Target:  5'- -cGCGCCGGaccugcccccGGGCaccGCGUACCGUCu -3'
miRNA:   3'- gaCGUGGUU----------CCUGaa-CGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 182549 0.68 0.877153
Target:  5'- aCUGCGCCGcGGcCg---GCACCGUCAc -3'
miRNA:   3'- -GACGUGGUuCCuGaacgCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 158253 0.68 0.869898
Target:  5'- -cGCACgGAGGAUUUGaaggcuCGCACCG-CGa -3'
miRNA:   3'- gaCGUGgUUCCUGAAC------GCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 120822 0.68 0.868421
Target:  5'- gCUGCGacacgcucucgaCGGGGGCUaucccUGCGCGgCCGUCGu -3'
miRNA:   3'- -GACGUg-----------GUUCCUGA-----ACGCGU-GGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 14348 0.69 0.854757
Target:  5'- aCUaCACCGAGGAgUcuuaccgcUGCGUGCUGUCGg -3'
miRNA:   3'- -GAcGUGGUUCCUgA--------ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 187845 0.69 0.846883
Target:  5'- -cGCGCCGAGGGCUcugcccagccGCGCGCgGcUCGc -3'
miRNA:   3'- gaCGUGGUUCCUGAa---------CGCGUGgC-AGU- -5'
11061 3' -55.1 NC_002794.1 + 12001 0.7 0.81352
Target:  5'- gCUGCugUguGGACUgaUGUGCGCCGcCGg -3'
miRNA:   3'- -GACGugGuuCCUGA--ACGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 99805 0.7 0.80475
Target:  5'- -cGCGCCGcGGGCgccgGCGCCGUCGg -3'
miRNA:   3'- gaCGUGGUuCCUGaacgCGUGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.