miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 3' -55.1 NC_002794.1 + 8036 0.67 0.910081
Target:  5'- gUGUcCCGAGGAagacGcCGCACCGUCu -3'
miRNA:   3'- gACGuGGUUCCUgaa-C-GCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 12001 0.7 0.81352
Target:  5'- gCUGCugUguGGACUgaUGUGCGCCGcCGg -3'
miRNA:   3'- -GACGugGuuCCUGA--ACGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 14348 0.69 0.854757
Target:  5'- aCUaCACCGAGGAgUcuuaccgcUGCGUGCUGUCGg -3'
miRNA:   3'- -GAcGUGGUUCCUgA--------ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 18835 0.73 0.628917
Target:  5'- -gGCGCgGAGGAgaccuCgaGCGCGCCGUCGc -3'
miRNA:   3'- gaCGUGgUUCCU-----GaaCGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 19839 0.68 0.903954
Target:  5'- gCUGCACggcuaCGGGGAC-UGCGUgucgcacucgACCGUCu -3'
miRNA:   3'- -GACGUG-----GUUCCUGaACGCG----------UGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 20433 0.66 0.937169
Target:  5'- -cGCGCCgGAGGAC--GUGCACCGc-- -3'
miRNA:   3'- gaCGUGG-UUCCUGaaCGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 23974 0.66 0.950585
Target:  5'- -aGCGgCGAGG-CcgGCGcCACCGUCGc -3'
miRNA:   3'- gaCGUgGUUCCuGaaCGC-GUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 24078 0.68 0.897594
Target:  5'- gUGCGCCc-GGGCggGCGuCGCCGUa- -3'
miRNA:   3'- gACGUGGuuCCUGaaCGC-GUGGCAgu -5'
11061 3' -55.1 NC_002794.1 + 34445 0.67 0.932226
Target:  5'- cCUGCAgCucuucuggGAGGACgaguaccUGCGCACCuUCAa -3'
miRNA:   3'- -GACGUgG--------UUCCUGa------ACGCGUGGcAGU- -5'
11061 3' -55.1 NC_002794.1 + 44225 0.67 0.921073
Target:  5'- -gGCGCCGAGGGCUcgGUGCcgggcggcucgguGCCGggCGg -3'
miRNA:   3'- gaCGUGGUUCCUGAa-CGCG-------------UGGCa-GU- -5'
11061 3' -55.1 NC_002794.1 + 57062 0.72 0.699958
Target:  5'- cCUGCucaACCugGAGGcCUuaaacacugugcUGCGCACCGUCAa -3'
miRNA:   3'- -GACG---UGG--UUCCuGA------------ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 59685 0.74 0.602411
Target:  5'- cCUGCACCc-GGGCUucgcccucacgcuggUGCGCACCGaCAc -3'
miRNA:   3'- -GACGUGGuuCCUGA---------------ACGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 61855 0.75 0.528172
Target:  5'- -cGCGCCccauGGACgacgccGCGCGCCGUCGu -3'
miRNA:   3'- gaCGUGGuu--CCUGaa----CGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 66011 0.66 0.937169
Target:  5'- -gGCACCGAGG-CggccGCGgucguCGCCGUCGu -3'
miRNA:   3'- gaCGUGGUUCCuGaa--CGC-----GUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 73072 0.76 0.489435
Target:  5'- -gGCAg-GAGGACggGCGCACCGUCAa -3'
miRNA:   3'- gaCGUggUUCCUGaaCGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 75173 0.66 0.941875
Target:  5'- --aCACCAAGGugUUGaucaaCGCCGUCc -3'
miRNA:   3'- gacGUGGUUCCugAACgc---GUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 77342 0.71 0.739495
Target:  5'- gCUGCACCucccggAGGGGCacUGCGCgcugACCGUCu -3'
miRNA:   3'- -GACGUGG------UUCCUGa-ACGCG----UGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 82713 0.71 0.758741
Target:  5'- -cGCGCCGAGGACgccGCGcCACCa--- -3'
miRNA:   3'- gaCGUGGUUCCUGaa-CGC-GUGGcagu -5'
11061 3' -55.1 NC_002794.1 + 91817 0.67 0.922181
Target:  5'- gUGCcugACgGAGGACgcgcugaacgacgccUGuCGCACCGUCAa -3'
miRNA:   3'- gACG---UGgUUCCUGa--------------AC-GCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 98937 0.67 0.927046
Target:  5'- -cGCgGCCGggaaGGGGCUggggcucgugcUGgGCGCCGUCGg -3'
miRNA:   3'- gaCG-UGGU----UCCUGA-----------ACgCGUGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.