miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 3' -55.1 NC_002794.1 + 99805 0.7 0.80475
Target:  5'- -cGCGCCGcGGGCgccgGCGCCGUCGg -3'
miRNA:   3'- gaCGUGGUuCCUGaacgCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 101430 0.66 0.936685
Target:  5'- gCUGCGcgacgauCCGGGGACgccgGCGCGCCc--- -3'
miRNA:   3'- -GACGU-------GGUUCCUGaa--CGCGUGGcagu -5'
11061 3' -55.1 NC_002794.1 + 101798 0.68 0.891005
Target:  5'- gCUGCGCCGcuGGuuGGCgcagcgGCGCGCCGUg- -3'
miRNA:   3'- -GACGUGGU--UC--CUGaa----CGCGUGGCAgu -5'
11061 3' -55.1 NC_002794.1 + 102147 0.67 0.927046
Target:  5'- gUGCGCUucGGcgGCgUGCGCGCCGg-- -3'
miRNA:   3'- gACGUGGuuCC--UGaACGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 108846 0.66 0.950585
Target:  5'- -aGCgaACCGGGuGugUUgGCGCGCgGUCAc -3'
miRNA:   3'- gaCG--UGGUUC-CugAA-CGCGUGgCAGU- -5'
11061 3' -55.1 NC_002794.1 + 112320 0.66 0.954594
Target:  5'- -gGCGCCGAcGGCggggaGCGCGCCGg-- -3'
miRNA:   3'- gaCGUGGUUcCUGaa---CGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 112589 0.66 0.946346
Target:  5'- gCUGCGCCAGGGcccguucgaACgccuccaccUGCGCGUCGUCc -3'
miRNA:   3'- -GACGUGGUUCC---------UGa--------ACGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 113737 0.72 0.70995
Target:  5'- aCUGCACCGAccGGACcagGCGCGCgagggUGUCGg -3'
miRNA:   3'- -GACGUGGUU--CCUGaa-CGCGUG-----GCAGU- -5'
11061 3' -55.1 NC_002794.1 + 115044 0.67 0.915973
Target:  5'- gUGCgACCGGGcGGCgggcgGCaGCGCCGUCc -3'
miRNA:   3'- gACG-UGGUUC-CUGaa---CG-CGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 117854 0.67 0.927046
Target:  5'- -aGCGCgaCGGGGGCUgGCGCGCCa--- -3'
miRNA:   3'- gaCGUG--GUUCCUGAaCGCGUGGcagu -5'
11061 3' -55.1 NC_002794.1 + 120822 0.68 0.868421
Target:  5'- gCUGCGacacgcucucgaCGGGGGCUaucccUGCGCGgCCGUCGu -3'
miRNA:   3'- -GACGUg-----------GUUCCUGA-----ACGCGU-GGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 121405 0.66 0.958377
Target:  5'- -gGCGCC-GGGACc-GCG-ACCGUCGc -3'
miRNA:   3'- gaCGUGGuUCCUGaaCGCgUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 123921 0.68 0.88419
Target:  5'- -cGCGCCGGaccugcccccGGGCaccGCGUACCGUCu -3'
miRNA:   3'- gaCGUGGUU----------CCUGaa-CGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 126602 0.66 0.950585
Target:  5'- -aGCGCCGAGG-CcgGCGCcgaCGUCGc -3'
miRNA:   3'- gaCGUGGUUCCuGaaCGCGug-GCAGU- -5'
11061 3' -55.1 NC_002794.1 + 133536 0.67 0.921628
Target:  5'- -gGCcgACCGGGuACgcguUGUGCACCGUCAc -3'
miRNA:   3'- gaCG--UGGUUCcUGa---ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 135515 0.67 0.932226
Target:  5'- -cGCACaccGGACgcucGCGCGCCGcUCGg -3'
miRNA:   3'- gaCGUGguuCCUGaa--CGCGUGGC-AGU- -5'
11061 3' -55.1 NC_002794.1 + 139470 0.67 0.929147
Target:  5'- gUGCGCCAGgacggugguguagauGGGCgcggGCGCGCUG-CAg -3'
miRNA:   3'- gACGUGGUU---------------CCUGaa--CGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 141439 0.72 0.679813
Target:  5'- -gGCGCCGGGGGCgccgggagcgGCGCGgCGUCc -3'
miRNA:   3'- gaCGUGGUUCCUGaa--------CGCGUgGCAGu -5'
11061 3' -55.1 NC_002794.1 + 142477 0.72 0.719876
Target:  5'- -gGCACCGuGGACgcgUGCGgCGCCGgCAg -3'
miRNA:   3'- gaCGUGGUuCCUGa--ACGC-GUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 143556 0.66 0.950585
Target:  5'- -aGCACgGuGGcccaGCcgUGCGCGCCGUCc -3'
miRNA:   3'- gaCGUGgUuCC----UGa-ACGCGUGGCAGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.