miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 3' -55.1 NC_002794.1 + 187845 0.69 0.846883
Target:  5'- -cGCGCCGAGGGCUcugcccagccGCGCGCgGcUCGc -3'
miRNA:   3'- gaCGUGGUUCCUGAa---------CGCGUGgC-AGU- -5'
11061 3' -55.1 NC_002794.1 + 186757 0.67 0.932226
Target:  5'- -cGUACCAGGGGCaggccagGCGCuCCGaCAc -3'
miRNA:   3'- gaCGUGGUUCCUGaa-----CGCGuGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 183547 0.72 0.719876
Target:  5'- -cGC-CCGGGGACacUGCGCGCCGa-- -3'
miRNA:   3'- gaCGuGGUUCCUGa-ACGCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 182549 0.68 0.877153
Target:  5'- aCUGCGCCGcGGcCg---GCACCGUCAc -3'
miRNA:   3'- -GACGUGGUuCCuGaacgCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 182181 0.66 0.954594
Target:  5'- gCUGUACCAuaacGGGGCcucgGCGcCGgCGUCGc -3'
miRNA:   3'- -GACGUGGU----UCCUGaa--CGC-GUgGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 182057 0.68 0.891005
Target:  5'- cCUGCGCguAGGGCgccUGCGUcCgGUCGg -3'
miRNA:   3'- -GACGUGguUCCUGa--ACGCGuGgCAGU- -5'
11061 3' -55.1 NC_002794.1 + 158253 0.68 0.869898
Target:  5'- -cGCACgGAGGAUUUGaaggcuCGCACCG-CGa -3'
miRNA:   3'- gaCGUGgUUCCUGAAC------GCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 152234 0.67 0.910081
Target:  5'- -cGCGCCAcGu-CgcGCGCACCGUCGc -3'
miRNA:   3'- gaCGUGGUuCcuGaaCGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 152105 0.67 0.921628
Target:  5'- --cCGCCGucuGGGGCUUGCuGCGCCGcUCc -3'
miRNA:   3'- gacGUGGU---UCCUGAACG-CGUGGC-AGu -5'
11061 3' -55.1 NC_002794.1 + 151229 0.67 0.932226
Target:  5'- uUGgGCC-AGGGCUaccgGCuCACCGUCGu -3'
miRNA:   3'- gACgUGGuUCCUGAa---CGcGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 150593 0.66 0.950585
Target:  5'- -gGCGcCCGAGGACggccGgGCGCCGg-- -3'
miRNA:   3'- gaCGU-GGUUCCUGaa--CgCGUGGCagu -5'
11061 3' -55.1 NC_002794.1 + 143556 0.66 0.950585
Target:  5'- -aGCACgGuGGcccaGCcgUGCGCGCCGUCc -3'
miRNA:   3'- gaCGUGgUuCC----UGa-ACGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 142477 0.72 0.719876
Target:  5'- -gGCACCGuGGACgcgUGCGgCGCCGgCAg -3'
miRNA:   3'- gaCGUGGUuCCUGa--ACGC-GUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 141439 0.72 0.679813
Target:  5'- -gGCGCCGGGGGCgccgggagcgGCGCGgCGUCc -3'
miRNA:   3'- gaCGUGGUUCCUGaa--------CGCGUgGCAGu -5'
11061 3' -55.1 NC_002794.1 + 139470 0.67 0.929147
Target:  5'- gUGCGCCAGgacggugguguagauGGGCgcggGCGCGCUG-CAg -3'
miRNA:   3'- gACGUGGUU---------------CCUGaa--CGCGUGGCaGU- -5'
11061 3' -55.1 NC_002794.1 + 135515 0.67 0.932226
Target:  5'- -cGCACaccGGACgcucGCGCGCCGcUCGg -3'
miRNA:   3'- gaCGUGguuCCUGaa--CGCGUGGC-AGU- -5'
11061 3' -55.1 NC_002794.1 + 133536 0.67 0.921628
Target:  5'- -gGCcgACCGGGuACgcguUGUGCACCGUCAc -3'
miRNA:   3'- gaCG--UGGUUCcUGa---ACGCGUGGCAGU- -5'
11061 3' -55.1 NC_002794.1 + 126602 0.66 0.950585
Target:  5'- -aGCGCCGAGG-CcgGCGCcgaCGUCGc -3'
miRNA:   3'- gaCGUGGUUCCuGaaCGCGug-GCAGU- -5'
11061 3' -55.1 NC_002794.1 + 123921 0.68 0.88419
Target:  5'- -cGCGCCGGaccugcccccGGGCaccGCGUACCGUCu -3'
miRNA:   3'- gaCGUGGUU----------CCUGaa-CGCGUGGCAGu -5'
11061 3' -55.1 NC_002794.1 + 121405 0.66 0.958377
Target:  5'- -gGCGCC-GGGACc-GCG-ACCGUCGc -3'
miRNA:   3'- gaCGUGGuUCCUGaaCGCgUGGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.