miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 5' -55.4 NC_002794.1 + 134127 0.66 0.948543
Target:  5'- -cCGACGGCgCG-GCGAGCGCggaagcUCGGu -3'
miRNA:   3'- guGUUGUCGgGCgCGUUCGCGa-----AGUC- -5'
11061 5' -55.4 NC_002794.1 + 47411 0.66 0.948543
Target:  5'- cCGCcguCGGCgCCGuCGCGcggagcgccaGGCGUUUCAGg -3'
miRNA:   3'- -GUGuu-GUCG-GGC-GCGU----------UCGCGAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 145199 0.66 0.948543
Target:  5'- cCGCGGCGGCCCuccgGCA-GCGCUccuucguggugUCGGa -3'
miRNA:   3'- -GUGUUGUCGGGcg--CGUuCGCGA-----------AGUC- -5'
11061 5' -55.4 NC_002794.1 + 113540 0.66 0.948543
Target:  5'- gGCGucgcCGGCCCGgaGCAGGCGC--CGGa -3'
miRNA:   3'- gUGUu---GUCGGGCg-CGUUCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 32304 0.66 0.948543
Target:  5'- cCGCGGCGG-CCGCGCcGGcCGCggcCGGa -3'
miRNA:   3'- -GUGUUGUCgGGCGCGuUC-GCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 38004 0.66 0.948543
Target:  5'- cCACGccguaGGCCUGC---AGCGCUUCGGg -3'
miRNA:   3'- -GUGUug---UCGGGCGcguUCGCGAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 14588 0.66 0.944181
Target:  5'- --aAGCGGgCCGUgGCGAGCGCgcCGGg -3'
miRNA:   3'- gugUUGUCgGGCG-CGUUCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 117841 0.66 0.944181
Target:  5'- aGCAGCGGCacggaGCGCGacgggggcuGGCGCgcCAGg -3'
miRNA:   3'- gUGUUGUCGgg---CGCGU---------UCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 12435 0.66 0.939585
Target:  5'- gGCAGCuGuCCCGCGUcAGCGCccgccUCAc -3'
miRNA:   3'- gUGUUGuC-GGGCGCGuUCGCGa----AGUc -5'
11061 5' -55.4 NC_002794.1 + 56085 0.66 0.939585
Target:  5'- -cCAGCAGgCCGCGCAGcacgugcgugcuGCGCUg--- -3'
miRNA:   3'- guGUUGUCgGGCGCGUU------------CGCGAaguc -5'
11061 5' -55.4 NC_002794.1 + 190946 0.66 0.939585
Target:  5'- aGC-ACGGCCCcaGCaGCAccAGCGCcUCGGg -3'
miRNA:   3'- gUGuUGUCGGG--CG-CGU--UCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 113382 0.66 0.939585
Target:  5'- --gGGCcGCCguCGUGCAGGCGCUgCAGc -3'
miRNA:   3'- gugUUGuCGG--GCGCGUUCGCGAaGUC- -5'
11061 5' -55.4 NC_002794.1 + 83880 0.66 0.939585
Target:  5'- gCGCGACGGcCCCGgGCucGGCGCc---- -3'
miRNA:   3'- -GUGUUGUC-GGGCgCGu-UCGCGaaguc -5'
11061 5' -55.4 NC_002794.1 + 75151 0.66 0.939585
Target:  5'- aACAGCAGCCCGaucaGCAcgaacaccaaGGUGUUgaUCAa -3'
miRNA:   3'- gUGUUGUCGGGCg---CGU----------UCGCGA--AGUc -5'
11061 5' -55.4 NC_002794.1 + 55805 0.66 0.939585
Target:  5'- gCGCAGC-GCCgGgCGCGGGCGCg---- -3'
miRNA:   3'- -GUGUUGuCGGgC-GCGUUCGCGaaguc -5'
11061 5' -55.4 NC_002794.1 + 74381 0.66 0.939585
Target:  5'- gGgGGCGGCCgGCGCGacuacacgaccgAGCGCcUCGa -3'
miRNA:   3'- gUgUUGUCGGgCGCGU------------UCGCGaAGUc -5'
11061 5' -55.4 NC_002794.1 + 59215 0.66 0.939585
Target:  5'- gGCGucuCGGCCgcggCGCGCGAGCuCUUCGc -3'
miRNA:   3'- gUGUu--GUCGG----GCGCGUUCGcGAAGUc -5'
11061 5' -55.4 NC_002794.1 + 113177 0.66 0.939585
Target:  5'- gGCGGCGGCggUCGCGgAGGCGCcUCc- -3'
miRNA:   3'- gUGUUGUCG--GGCGCgUUCGCGaAGuc -5'
11061 5' -55.4 NC_002794.1 + 90476 0.66 0.93816
Target:  5'- gCGCGGCGGggccgccguCCCGCGCGaucGgccguccccgccgcGCGCUUCGGc -3'
miRNA:   3'- -GUGUUGUC---------GGGCGCGU---U--------------CGCGAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 180648 0.66 0.934752
Target:  5'- gACGACgAGCCaGCGCAGgGCGUgcCGGg -3'
miRNA:   3'- gUGUUG-UCGGgCGCGUU-CGCGaaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.