Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11061 | 5' | -55.4 | NC_002794.1 | + | 180648 | 0.66 | 0.934752 |
Target: 5'- gACGACgAGCCaGCGCAGgGCGUgcCGGg -3' miRNA: 3'- gUGUUG-UCGGgCGCGUU-CGCGaaGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 75151 | 0.66 | 0.939585 |
Target: 5'- aACAGCAGCCCGaucaGCAcgaacaccaaGGUGUUgaUCAa -3' miRNA: 3'- gUGUUGUCGGGCg---CGU----------UCGCGA--AGUc -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 83880 | 0.66 | 0.939585 |
Target: 5'- gCGCGACGGcCCCGgGCucGGCGCc---- -3' miRNA: 3'- -GUGUUGUC-GGGCgCGu-UCGCGaaguc -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 113382 | 0.66 | 0.939585 |
Target: 5'- --gGGCcGCCguCGUGCAGGCGCUgCAGc -3' miRNA: 3'- gugUUGuCGG--GCGCGUUCGCGAaGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 190946 | 0.66 | 0.939585 |
Target: 5'- aGC-ACGGCCCcaGCaGCAccAGCGCcUCGGg -3' miRNA: 3'- gUGuUGUCGGG--CG-CGU--UCGCGaAGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 56085 | 0.66 | 0.939585 |
Target: 5'- -cCAGCAGgCCGCGCAGcacgugcgugcuGCGCUg--- -3' miRNA: 3'- guGUUGUCgGGCGCGUU------------CGCGAaguc -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 12435 | 0.66 | 0.939585 |
Target: 5'- gGCAGCuGuCCCGCGUcAGCGCccgccUCAc -3' miRNA: 3'- gUGUUGuC-GGGCGCGuUCGCGa----AGUc -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 59508 | 0.66 | 0.934752 |
Target: 5'- cCACGACGGCggcuucCCGCuGCAcccGGCGCUggcgCAc -3' miRNA: 3'- -GUGUUGUCG------GGCG-CGU---UCGCGAa---GUc -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 90476 | 0.66 | 0.93816 |
Target: 5'- gCGCGGCGGggccgccguCCCGCGCGaucGgccguccccgccgcGCGCUUCGGc -3' miRNA: 3'- -GUGUUGUC---------GGGCGCGU---U--------------CGCGAAGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 55805 | 0.66 | 0.939585 |
Target: 5'- gCGCAGC-GCCgGgCGCGGGCGCg---- -3' miRNA: 3'- -GUGUUGuCGGgC-GCGUUCGCGaaguc -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 74381 | 0.66 | 0.939585 |
Target: 5'- gGgGGCGGCCgGCGCGacuacacgaccgAGCGCcUCGa -3' miRNA: 3'- gUgUUGUCGGgCGCGU------------UCGCGaAGUc -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 59215 | 0.66 | 0.939585 |
Target: 5'- gGCGucuCGGCCgcggCGCGCGAGCuCUUCGc -3' miRNA: 3'- gUGUu--GUCGG----GCGCGUUCGcGAAGUc -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 47411 | 0.66 | 0.948543 |
Target: 5'- cCGCcguCGGCgCCGuCGCGcggagcgccaGGCGUUUCAGg -3' miRNA: 3'- -GUGuu-GUCG-GGC-GCGU----------UCGCGAAGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 145199 | 0.66 | 0.948543 |
Target: 5'- cCGCGGCGGCCCuccgGCA-GCGCUccuucguggugUCGGa -3' miRNA: 3'- -GUGUUGUCGGGcg--CGUuCGCGA-----------AGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 113540 | 0.66 | 0.948543 |
Target: 5'- gGCGucgcCGGCCCGgaGCAGGCGC--CGGa -3' miRNA: 3'- gUGUu---GUCGGGCg-CGUUCGCGaaGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 32304 | 0.66 | 0.948543 |
Target: 5'- cCGCGGCGG-CCGCGCcGGcCGCggcCGGa -3' miRNA: 3'- -GUGUUGUCgGGCGCGuUC-GCGaa-GUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 38004 | 0.66 | 0.948543 |
Target: 5'- cCACGccguaGGCCUGC---AGCGCUUCGGg -3' miRNA: 3'- -GUGUug---UCGGGCGcguUCGCGAAGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 117841 | 0.66 | 0.944181 |
Target: 5'- aGCAGCGGCacggaGCGCGacgggggcuGGCGCgcCAGg -3' miRNA: 3'- gUGUUGUCGgg---CGCGU---------UCGCGaaGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 14588 | 0.66 | 0.944181 |
Target: 5'- --aAGCGGgCCGUgGCGAGCGCgcCGGg -3' miRNA: 3'- gugUUGUCgGGCG-CGUUCGCGaaGUC- -5' |
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11061 | 5' | -55.4 | NC_002794.1 | + | 113177 | 0.66 | 0.939585 |
Target: 5'- gGCGGCGGCggUCGCGgAGGCGCcUCc- -3' miRNA: 3'- gUGUUGUCG--GGCGCgUUCGCGaAGuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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