miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 5' -55.4 NC_002794.1 + 60169 0.89 0.074754
Target:  5'- -cCAACAGCCCGCGCGGGCGC-UCGGc -3'
miRNA:   3'- guGUUGUCGGGCGCGUUCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 14498 0.81 0.243595
Target:  5'- gGCGGCGGCCCGCGCucgcGGCGCUcguggcgccgcUCGGc -3'
miRNA:   3'- gUGUUGUCGGGCGCGu---UCGCGA-----------AGUC- -5'
11061 5' -55.4 NC_002794.1 + 195226 0.8 0.287636
Target:  5'- gGCAGCAGCCCGCGC-GGCGUcacCAGc -3'
miRNA:   3'- gUGUUGUCGGGCGCGuUCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 184954 0.77 0.419651
Target:  5'- uGCGcCGGCCCGCGCAGcCGCUcgUCGGg -3'
miRNA:   3'- gUGUuGUCGGGCGCGUUcGCGA--AGUC- -5'
11061 5' -55.4 NC_002794.1 + 114969 0.76 0.455637
Target:  5'- cCGCAGCAGCUCgGCGCAGGCGUccugUAGu -3'
miRNA:   3'- -GUGUUGUCGGG-CGCGUUCGCGaa--GUC- -5'
11061 5' -55.4 NC_002794.1 + 187341 0.76 0.463962
Target:  5'- aGCAGCAGCCCGUcguucgcggucacGUAGGCGCgcagCAGc -3'
miRNA:   3'- gUGUUGUCGGGCG-------------CGUUCGCGaa--GUC- -5'
11061 5' -55.4 NC_002794.1 + 60076 0.75 0.512542
Target:  5'- uGCcGCcGCCCGCGCAGGUGCUcCAc -3'
miRNA:   3'- gUGuUGuCGGGCGCGUUCGCGAaGUc -5'
11061 5' -55.4 NC_002794.1 + 117744 0.73 0.623049
Target:  5'- cCugGAUGGUCCGCGCGugguGCGCagCAGg -3'
miRNA:   3'- -GugUUGUCGGGCGCGUu---CGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 193170 0.72 0.674099
Target:  5'- aGCAcCAGCCCGCGCcgcgccAGCGUgucCAGg -3'
miRNA:   3'- gUGUuGUCGGGCGCGu-----UCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 184027 0.72 0.684241
Target:  5'- cCGCcACGGCaCCGCGCGcAGCGCgcggUCGc -3'
miRNA:   3'- -GUGuUGUCG-GGCGCGU-UCGCGa---AGUc -5'
11061 5' -55.4 NC_002794.1 + 92325 0.72 0.684241
Target:  5'- gGCGGgGGCCCGgGCGGGCGgcUCGGc -3'
miRNA:   3'- gUGUUgUCGGGCgCGUUCGCgaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 103088 0.72 0.684241
Target:  5'- aGCGucGCGGCCCGCGC--GCGCggUCAc -3'
miRNA:   3'- gUGU--UGUCGGGCGCGuuCGCGa-AGUc -5'
11061 5' -55.4 NC_002794.1 + 184585 0.72 0.694339
Target:  5'- gGCGGCGGCCaCGCGCGGcCGCgggaUCGGc -3'
miRNA:   3'- gUGUUGUCGG-GCGCGUUcGCGa---AGUC- -5'
11061 5' -55.4 NC_002794.1 + 92267 0.72 0.694339
Target:  5'- gGCGGCGGCgCCGgGCGAgGCGCgcaaggUCGGc -3'
miRNA:   3'- gUGUUGUCG-GGCgCGUU-CGCGa-----AGUC- -5'
11061 5' -55.4 NC_002794.1 + 95778 0.72 0.694339
Target:  5'- gACGGCGGCCgGgGCGagaGGCGCggCGGa -3'
miRNA:   3'- gUGUUGUCGGgCgCGU---UCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 99599 0.72 0.694339
Target:  5'- gGCGGCGGCgCGCGCucGCGCcgccUCGGc -3'
miRNA:   3'- gUGUUGUCGgGCGCGuuCGCGa---AGUC- -5'
11061 5' -55.4 NC_002794.1 + 45723 0.71 0.701377
Target:  5'- -cCAACAGCCCGgGCGucuccacguagcgcAGCGCgcggCGGa -3'
miRNA:   3'- guGUUGUCGGGCgCGU--------------UCGCGaa--GUC- -5'
11061 5' -55.4 NC_002794.1 + 29754 0.71 0.704385
Target:  5'- gGCGcCgAGCCCGCGcCGAGCGUcUCGGc -3'
miRNA:   3'- gUGUuG-UCGGGCGC-GUUCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 187047 0.71 0.71437
Target:  5'- uCGCAgucccggagcccGCGGCCCGC-CAGGUGCcgCAGg -3'
miRNA:   3'- -GUGU------------UGUCGGGCGcGUUCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 55302 0.71 0.71437
Target:  5'- gGCGGCGGCgUCGCgGCGGGCGCgggCGGc -3'
miRNA:   3'- gUGUUGUCG-GGCG-CGUUCGCGaa-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.