miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 5' -55.4 NC_002794.1 + 113103 0.71 0.71437
Target:  5'- gGCGGCAGCUCcUGCAccuGGCGCUUCu- -3'
miRNA:   3'- gUGUUGUCGGGcGCGU---UCGCGAAGuc -5'
11061 5' -55.4 NC_002794.1 + 114530 0.71 0.734122
Target:  5'- aGCGGCAGCCgcgcgagcUGCGCGAGCuguuCUUCGGc -3'
miRNA:   3'- gUGUUGUCGG--------GCGCGUUCGc---GAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 59599 0.71 0.734122
Target:  5'- cCGCAGCAGCucuccuCCGUGCuGGCGCUgcUCGc -3'
miRNA:   3'- -GUGUUGUCG------GGCGCGuUCGCGA--AGUc -5'
11061 5' -55.4 NC_002794.1 + 34773 0.71 0.74387
Target:  5'- gCACGGCcGCCCGCGCcAGC-CgagUCGGc -3'
miRNA:   3'- -GUGUUGuCGGGCGCGuUCGcGa--AGUC- -5'
11061 5' -55.4 NC_002794.1 + 113646 0.7 0.75352
Target:  5'- aGCAGCGGCCCG-GCGuccucggcguccAGCGCggcgagCAGg -3'
miRNA:   3'- gUGUUGUCGGGCgCGU------------UCGCGaa----GUC- -5'
11061 5' -55.4 NC_002794.1 + 340 0.7 0.763063
Target:  5'- -cCGACAGCCCGCGCGA-CGg--CAGa -3'
miRNA:   3'- guGUUGUCGGGCGCGUUcGCgaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 30525 0.7 0.763063
Target:  5'- gCGCGGCAGCCCGCGCuccAAGacccUCGGa -3'
miRNA:   3'- -GUGUUGUCGGGCGCG---UUCgcgaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 102508 0.7 0.763063
Target:  5'- uGCAGCGGCUgGCGCGcGCGCg---- -3'
miRNA:   3'- gUGUUGUCGGgCGCGUuCGCGaaguc -5'
11061 5' -55.4 NC_002794.1 + 63516 0.7 0.763063
Target:  5'- cCGCGACGccuCCCGCGCGAGcCGCcUCGc -3'
miRNA:   3'- -GUGUUGUc--GGGCGCGUUC-GCGaAGUc -5'
11061 5' -55.4 NC_002794.1 + 155451 0.7 0.79096
Target:  5'- gACAACAGCCCgGCGCGuugauAG-GCUUUAu -3'
miRNA:   3'- gUGUUGUCGGG-CGCGU-----UCgCGAAGUc -5'
11061 5' -55.4 NC_002794.1 + 62338 0.7 0.799984
Target:  5'- gGCGG-AGCCCGCGCcGGCGCa---- -3'
miRNA:   3'- gUGUUgUCGGGCGCGuUCGCGaaguc -5'
11061 5' -55.4 NC_002794.1 + 44505 0.69 0.806212
Target:  5'- uCACGGCGGCCCaGaccgggcccgugucCGCGAGCGCgccgUCGu -3'
miRNA:   3'- -GUGUUGUCGGG-C--------------GCGUUCGCGa---AGUc -5'
11061 5' -55.4 NC_002794.1 + 114122 0.69 0.806212
Target:  5'- gACAGCucguucuugccgccGGCCagggCGCGCAGGCGCcgcgUCAGc -3'
miRNA:   3'- gUGUUG--------------UCGG----GCGCGUUCGCGa---AGUC- -5'
11061 5' -55.4 NC_002794.1 + 82487 0.69 0.808858
Target:  5'- cCGCGacGCGGCCCGcCGCGAcGCGCg---- -3'
miRNA:   3'- -GUGU--UGUCGGGC-GCGUU-CGCGaaguc -5'
11061 5' -55.4 NC_002794.1 + 42572 0.69 0.808858
Target:  5'- cCGCGGCGGaCCCGCGgAcggaggagGGCGCggCGGc -3'
miRNA:   3'- -GUGUUGUC-GGGCGCgU--------UCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 107527 0.69 0.808858
Target:  5'- -cCGACGGCCgGCGC-GGCGCcggCGGc -3'
miRNA:   3'- guGUUGUCGGgCGCGuUCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 190201 0.69 0.817571
Target:  5'- gCGCucCAGCgCCGCGCGcacccgccgGGCGCUcCGGu -3'
miRNA:   3'- -GUGuuGUCG-GGCGCGU---------UCGCGAaGUC- -5'
11061 5' -55.4 NC_002794.1 + 72562 0.69 0.825269
Target:  5'- aCGCGGCcgggaagAGCCCGCcCAacAGCGCgUUCAGc -3'
miRNA:   3'- -GUGUUG-------UCGGGCGcGU--UCGCG-AAGUC- -5'
11061 5' -55.4 NC_002794.1 + 193358 0.69 0.826116
Target:  5'- aCACAGCAGCCgGUGCcacgggccGCGCUccUCGc -3'
miRNA:   3'- -GUGUUGUCGGgCGCGuu------CGCGA--AGUc -5'
11061 5' -55.4 NC_002794.1 + 186637 0.69 0.826116
Target:  5'- gAC-ACAGCCCGCGCGGGUcgGCcgCGc -3'
miRNA:   3'- gUGuUGUCGGGCGCGUUCG--CGaaGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.