miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 5' -55.4 NC_002794.1 + 191527 0.66 0.934752
Target:  5'- gGCGuCGGCCCGCGCcuccCGCcgCAGu -3'
miRNA:   3'- gUGUuGUCGGGCGCGuuc-GCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 180648 0.66 0.934752
Target:  5'- gACGACgAGCCaGCGCAGgGCGUgcCGGg -3'
miRNA:   3'- gUGUUG-UCGGgCGCGUU-CGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 59508 0.66 0.934752
Target:  5'- cCACGACGGCggcuucCCGCuGCAcccGGCGCUggcgCAc -3'
miRNA:   3'- -GUGUUGUCG------GGCG-CGU---UCGCGAa---GUc -5'
11061 5' -55.4 NC_002794.1 + 50792 0.66 0.934255
Target:  5'- gGCGGCGccuccucGCCCgGCGuCGGGCGCUcCGGc -3'
miRNA:   3'- gUGUUGU-------CGGG-CGC-GUUCGCGAaGUC- -5'
11061 5' -55.4 NC_002794.1 + 91331 0.66 0.929681
Target:  5'- uCACGGCgcugGGUCagGCGCu-GCGCUUCGGc -3'
miRNA:   3'- -GUGUUG----UCGGg-CGCGuuCGCGAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 136634 0.66 0.929681
Target:  5'- gGCAGCGGCUCagGgGCAGGUGCgugUUGGu -3'
miRNA:   3'- gUGUUGUCGGG--CgCGUUCGCGa--AGUC- -5'
11061 5' -55.4 NC_002794.1 + 92142 0.66 0.929681
Target:  5'- --aAGCAGCUCaaGCGCGAGCcCUUCGu -3'
miRNA:   3'- gugUUGUCGGG--CGCGUUCGcGAAGUc -5'
11061 5' -55.4 NC_002794.1 + 187793 0.66 0.929681
Target:  5'- aGgAACGGCCCGCgaaGCGAGCGag-CGa -3'
miRNA:   3'- gUgUUGUCGGGCG---CGUUCGCgaaGUc -5'
11061 5' -55.4 NC_002794.1 + 151867 0.66 0.929681
Target:  5'- gCGCAucuGCAGCCCGUGgAAGUGgcccucgaUUCGGc -3'
miRNA:   3'- -GUGU---UGUCGGGCGCgUUCGCg-------AAGUC- -5'
11061 5' -55.4 NC_002794.1 + 23914 0.66 0.92437
Target:  5'- uGCAGCAGCgUGgGCGAGCGag-CGa -3'
miRNA:   3'- gUGUUGUCGgGCgCGUUCGCgaaGUc -5'
11061 5' -55.4 NC_002794.1 + 72197 0.66 0.92437
Target:  5'- gCACAAC-GUCagGCGCAgcgGGCGCUgUCGGa -3'
miRNA:   3'- -GUGUUGuCGGg-CGCGU---UCGCGA-AGUC- -5'
11061 5' -55.4 NC_002794.1 + 46638 0.66 0.92437
Target:  5'- uCACGuuccGCCCGUGCAgcgaggaacAGCGCUcgCAGu -3'
miRNA:   3'- -GUGUugu-CGGGCGCGU---------UCGCGAa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 91235 0.66 0.92437
Target:  5'- gCGCGGCGGCCguCGgGCu-GCGCUcgCGGa -3'
miRNA:   3'- -GUGUUGUCGG--GCgCGuuCGCGAa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 118494 0.66 0.92437
Target:  5'- cCGCAGguGCUCGUGCGGGC-CgacCAGg -3'
miRNA:   3'- -GUGUUguCGGGCGCGUUCGcGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 185177 0.66 0.92437
Target:  5'- gCGCGgcGCGGUCgGCGCGgucGGCGCggUCAu -3'
miRNA:   3'- -GUGU--UGUCGGgCGCGU---UCGCGa-AGUc -5'
11061 5' -55.4 NC_002794.1 + 87072 0.66 0.92437
Target:  5'- aGCGACAGCaCgGUGCAGGC-CgggCGGg -3'
miRNA:   3'- gUGUUGUCG-GgCGCGUUCGcGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 78109 0.67 0.92107
Target:  5'- aCGCGGCGgcgccuccagacgccGCCCGagcCGCGAGCGCUcgAGa -3'
miRNA:   3'- -GUGUUGU---------------CGGGC---GCGUUCGCGAagUC- -5'
11061 5' -55.4 NC_002794.1 + 162452 0.67 0.918822
Target:  5'- gGCAACGGUCgCGgGCAAGUaaUUCGGc -3'
miRNA:   3'- gUGUUGUCGG-GCgCGUUCGcgAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 145520 0.67 0.918822
Target:  5'- gCGCGA-GGCCgGCcCGAGCGCcUCGGg -3'
miRNA:   3'- -GUGUUgUCGGgCGcGUUCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 49018 0.67 0.918822
Target:  5'- cCGCGGCGGCCgCgGCGUcguccGGCGCggucgUCAGc -3'
miRNA:   3'- -GUGUUGUCGG-G-CGCGu----UCGCGa----AGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.