miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 5' -55.4 NC_002794.1 + 162452 0.67 0.918822
Target:  5'- gGCAACGGUCgCGgGCAAGUaaUUCGGc -3'
miRNA:   3'- gUGUUGUCGG-GCgCGUUCGcgAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 126384 0.67 0.918822
Target:  5'- gCGCcGgGGCCUGCGCGgcGGCGUgcgCGGc -3'
miRNA:   3'- -GUGuUgUCGGGCGCGU--UCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 118272 0.67 0.917111
Target:  5'- gGCGGCGGCgccggcgucggggaCCGCGcCGGGCGCgUCGc -3'
miRNA:   3'- gUGUUGUCG--------------GGCGC-GUUCGCGaAGUc -5'
11061 5' -55.4 NC_002794.1 + 55614 0.67 0.913035
Target:  5'- aACGcCAGCCCGUGCA--CGCUggcCAGc -3'
miRNA:   3'- gUGUuGUCGGGCGCGUucGCGAa--GUC- -5'
11061 5' -55.4 NC_002794.1 + 140025 0.67 0.913035
Target:  5'- gGCcGCGGCCCcCGCGGGCGg--CGGg -3'
miRNA:   3'- gUGuUGUCGGGcGCGUUCGCgaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 190023 0.67 0.913035
Target:  5'- cCAuCGGCGGCCgguaGCGCAcguAGCGCUgacUCAu -3'
miRNA:   3'- -GU-GUUGUCGGg---CGCGU---UCGCGA---AGUc -5'
11061 5' -55.4 NC_002794.1 + 111132 0.67 0.913035
Target:  5'- -cCGGCGGCCggugcuccaCGCGguAGCGggUCAGg -3'
miRNA:   3'- guGUUGUCGG---------GCGCguUCGCgaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 102557 0.67 0.907011
Target:  5'- gACGGCGGCCCugGUGCugucgucGGUGCUgucgCAGg -3'
miRNA:   3'- gUGUUGUCGGG--CGCGu------UCGCGAa---GUC- -5'
11061 5' -55.4 NC_002794.1 + 72727 0.67 0.907011
Target:  5'- cCAUGACGGcCCCGCGCuccCGCggCGGc -3'
miRNA:   3'- -GUGUUGUC-GGGCGCGuucGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 123580 0.67 0.907011
Target:  5'- cCACGGCcgccGCCCGUGCA-GCGUccCGGa -3'
miRNA:   3'- -GUGUUGu---CGGGCGCGUuCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 128429 0.67 0.907011
Target:  5'- gAUGACcggguGGCCCGCGCGcacGGCGCcucCGGa -3'
miRNA:   3'- gUGUUG-----UCGGGCGCGU---UCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 192423 0.67 0.907011
Target:  5'- cCGCGACgGGUCCGCGgCcGGCGCgUCGc -3'
miRNA:   3'- -GUGUUG-UCGGGCGC-GuUCGCGaAGUc -5'
11061 5' -55.4 NC_002794.1 + 191651 0.67 0.900752
Target:  5'- -cCAGCAGCCCGC-CGggggacGGCGCcggCAGc -3'
miRNA:   3'- guGUUGUCGGGCGcGU------UCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 56166 0.67 0.900752
Target:  5'- gGCAGCGGCCCcgGUGCAcguagagcaccgGGcCGCggCAGg -3'
miRNA:   3'- gUGUUGUCGGG--CGCGU------------UC-GCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 120339 0.67 0.900752
Target:  5'- -cCGACAGCCCGCGCcucaucacgcuGAGCuGgUUCu- -3'
miRNA:   3'- guGUUGUCGGGCGCG-----------UUCG-CgAAGuc -5'
11061 5' -55.4 NC_002794.1 + 105547 0.67 0.900752
Target:  5'- gGCGGCGGCUCGgGCGAacggauaggguGCGCguagagCAGg -3'
miRNA:   3'- gUGUUGUCGGGCgCGUU-----------CGCGaa----GUC- -5'
11061 5' -55.4 NC_002794.1 + 148376 0.67 0.900752
Target:  5'- gGCAGCggGGCCaucuggaGCGCGAGCGaaaUCGGu -3'
miRNA:   3'- gUGUUG--UCGGg------CGCGUUCGCga-AGUC- -5'
11061 5' -55.4 NC_002794.1 + 37936 0.67 0.900752
Target:  5'- cCGCGGCcGCCCGUGCcucGGCGaCUcgcUCGGc -3'
miRNA:   3'- -GUGUUGuCGGGCGCGu--UCGC-GA---AGUC- -5'
11061 5' -55.4 NC_002794.1 + 186844 0.67 0.900752
Target:  5'- -cCGACAGC--GCGCGGGCGCUgccgugCAGc -3'
miRNA:   3'- guGUUGUCGggCGCGUUCGCGAa-----GUC- -5'
11061 5' -55.4 NC_002794.1 + 41289 0.67 0.894262
Target:  5'- gGCGGCGGCuCCGaCGCGGGcCGCgUgGGg -3'
miRNA:   3'- gUGUUGUCG-GGC-GCGUUC-GCGaAgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.