miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 5' -55.4 NC_002794.1 + 340 0.7 0.763063
Target:  5'- -cCGACAGCCCGCGCGA-CGg--CAGa -3'
miRNA:   3'- guGUUGUCGGGCGCGUUcGCgaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 12435 0.66 0.939585
Target:  5'- gGCAGCuGuCCCGCGUcAGCGCccgccUCAc -3'
miRNA:   3'- gUGUUGuC-GGGCGCGuUCGCGa----AGUc -5'
11061 5' -55.4 NC_002794.1 + 14498 0.81 0.243595
Target:  5'- gGCGGCGGCCCGCGCucgcGGCGCUcguggcgccgcUCGGc -3'
miRNA:   3'- gUGUUGUCGGGCGCGu---UCGCGA-----------AGUC- -5'
11061 5' -55.4 NC_002794.1 + 14588 0.66 0.944181
Target:  5'- --aAGCGGgCCGUgGCGAGCGCgcCGGg -3'
miRNA:   3'- gugUUGUCgGGCG-CGUUCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 23914 0.66 0.92437
Target:  5'- uGCAGCAGCgUGgGCGAGCGag-CGa -3'
miRNA:   3'- gUGUUGUCGgGCgCGUUCGCgaaGUc -5'
11061 5' -55.4 NC_002794.1 + 29754 0.71 0.704385
Target:  5'- gGCGcCgAGCCCGCGcCGAGCGUcUCGGc -3'
miRNA:   3'- gUGUuG-UCGGGCGC-GUUCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 30525 0.7 0.763063
Target:  5'- gCGCGGCAGCCCGCGCuccAAGacccUCGGa -3'
miRNA:   3'- -GUGUUGUCGGGCGCG---UUCgcgaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 31060 0.67 0.918822
Target:  5'- gCACGGCGGCCagcuCGCGCAgcacgucgAGCGUggCGa -3'
miRNA:   3'- -GUGUUGUCGG----GCGCGU--------UCGCGaaGUc -5'
11061 5' -55.4 NC_002794.1 + 32304 0.66 0.948543
Target:  5'- cCGCGGCGG-CCGCGCcGGcCGCggcCGGa -3'
miRNA:   3'- -GUGUUGUCgGGCGCGuUC-GCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 33783 0.66 0.934752
Target:  5'- gCACGACAGCCUGUGC---CGCcacCAGa -3'
miRNA:   3'- -GUGUUGUCGGGCGCGuucGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 34773 0.71 0.74387
Target:  5'- gCACGGCcGCCCGCGCcAGC-CgagUCGGc -3'
miRNA:   3'- -GUGUUGuCGGGCGCGuUCGcGa--AGUC- -5'
11061 5' -55.4 NC_002794.1 + 36870 0.68 0.850663
Target:  5'- cCACuGCAGCCgCGCcaGguAGCGCgugCAGa -3'
miRNA:   3'- -GUGuUGUCGG-GCG--CguUCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 37734 0.69 0.826116
Target:  5'- aGCGGCGGCgCCGCcgGCGgcGGCGCggCGGc -3'
miRNA:   3'- gUGUUGUCG-GGCG--CGU--UCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 37936 0.67 0.900752
Target:  5'- cCGCGGCcGCCCGUGCcucGGCGaCUcgcUCGGc -3'
miRNA:   3'- -GUGUUGuCGGGCGCGu--UCGC-GA---AGUC- -5'
11061 5' -55.4 NC_002794.1 + 38004 0.66 0.948543
Target:  5'- cCACGccguaGGCCUGC---AGCGCUUCGGg -3'
miRNA:   3'- -GUGUug---UCGGGCGcguUCGCGAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 41289 0.67 0.894262
Target:  5'- gGCGGCGGCuCCGaCGCGGGcCGCgUgGGg -3'
miRNA:   3'- gUGUUGUCG-GGC-GCGUUC-GCGaAgUC- -5'
11061 5' -55.4 NC_002794.1 + 42572 0.69 0.808858
Target:  5'- cCGCGGCGGaCCCGCGgAcggaggagGGCGCggCGGc -3'
miRNA:   3'- -GUGUUGUC-GGGCGCgU--------UCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 44505 0.69 0.806212
Target:  5'- uCACGGCGGCCCaGaccgggcccgugucCGCGAGCGCgccgUCGu -3'
miRNA:   3'- -GUGUUGUCGGG-C--------------GCGUUCGCGa---AGUc -5'
11061 5' -55.4 NC_002794.1 + 45723 0.71 0.701377
Target:  5'- -cCAACAGCCCGgGCGucuccacguagcgcAGCGCgcggCGGa -3'
miRNA:   3'- guGUUGUCGGGCgCGU--------------UCGCGaa--GUC- -5'
11061 5' -55.4 NC_002794.1 + 46638 0.66 0.92437
Target:  5'- uCACGuuccGCCCGUGCAgcgaggaacAGCGCUcgCAGu -3'
miRNA:   3'- -GUGUugu-CGGGCGCGU---------UCGCGAa-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.