miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 5' -55.4 NC_002794.1 + 47411 0.66 0.948543
Target:  5'- cCGCcguCGGCgCCGuCGCGcggagcgccaGGCGUUUCAGg -3'
miRNA:   3'- -GUGuu-GUCG-GGC-GCGU----------UCGCGAAGUC- -5'
11061 5' -55.4 NC_002794.1 + 47475 0.68 0.873432
Target:  5'- cCGCGACAGCCCGgGgucgaGCUUCAc -3'
miRNA:   3'- -GUGUUGUCGGGCgCguucgCGAAGUc -5'
11061 5' -55.4 NC_002794.1 + 48923 0.69 0.842669
Target:  5'- cCGCAGC-GCCaGCGcCAGGCGC-UCGGc -3'
miRNA:   3'- -GUGUUGuCGGgCGC-GUUCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 49018 0.67 0.918822
Target:  5'- cCGCGGCGGCCgCgGCGUcguccGGCGCggucgUCAGc -3'
miRNA:   3'- -GUGUUGUCGG-G-CGCGu----UCGCGa----AGUC- -5'
11061 5' -55.4 NC_002794.1 + 49246 0.68 0.86605
Target:  5'- -uCGACGggcGCCCGCGCAcccacgacgGGCGCUcCAa -3'
miRNA:   3'- guGUUGU---CGGGCGCGU---------UCGCGAaGUc -5'
11061 5' -55.4 NC_002794.1 + 50792 0.66 0.934255
Target:  5'- gGCGGCGccuccucGCCCgGCGuCGGGCGCUcCGGc -3'
miRNA:   3'- gUGUUGU-------CGGG-CGC-GUUCGCGAaGUC- -5'
11061 5' -55.4 NC_002794.1 + 55302 0.71 0.71437
Target:  5'- gGCGGCGGCgUCGCgGCGGGCGCgggCGGc -3'
miRNA:   3'- gUGUUGUCG-GGCG-CGUUCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 55614 0.67 0.913035
Target:  5'- aACGcCAGCCCGUGCA--CGCUggcCAGc -3'
miRNA:   3'- gUGUuGUCGGGCGCGUucGCGAa--GUC- -5'
11061 5' -55.4 NC_002794.1 + 55805 0.66 0.939585
Target:  5'- gCGCAGC-GCCgGgCGCGGGCGCg---- -3'
miRNA:   3'- -GUGUUGuCGGgC-GCGUUCGCGaaguc -5'
11061 5' -55.4 NC_002794.1 + 56085 0.66 0.939585
Target:  5'- -cCAGCAGgCCGCGCAGcacgugcgugcuGCGCUg--- -3'
miRNA:   3'- guGUUGUCgGGCGCGUU------------CGCGAaguc -5'
11061 5' -55.4 NC_002794.1 + 56166 0.67 0.900752
Target:  5'- gGCAGCGGCCCcgGUGCAcguagagcaccgGGcCGCggCAGg -3'
miRNA:   3'- gUGUUGUCGGG--CGCGU------------UC-GCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 59215 0.66 0.939585
Target:  5'- gGCGucuCGGCCgcggCGCGCGAGCuCUUCGc -3'
miRNA:   3'- gUGUu--GUCGG----GCGCGUUCGcGAAGUc -5'
11061 5' -55.4 NC_002794.1 + 59508 0.66 0.934752
Target:  5'- cCACGACGGCggcuucCCGCuGCAcccGGCGCUggcgCAc -3'
miRNA:   3'- -GUGUUGUCG------GGCG-CGU---UCGCGAa---GUc -5'
11061 5' -55.4 NC_002794.1 + 59599 0.71 0.734122
Target:  5'- cCGCAGCAGCucuccuCCGUGCuGGCGCUgcUCGc -3'
miRNA:   3'- -GUGUUGUCG------GGCGCGuUCGCGA--AGUc -5'
11061 5' -55.4 NC_002794.1 + 60076 0.75 0.512542
Target:  5'- uGCcGCcGCCCGCGCAGGUGCUcCAc -3'
miRNA:   3'- gUGuUGuCGGGCGCGUUCGCGAaGUc -5'
11061 5' -55.4 NC_002794.1 + 60169 0.89 0.074754
Target:  5'- -cCAACAGCCCGCGCGGGCGC-UCGGc -3'
miRNA:   3'- guGUUGUCGGGCGCGUUCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 61741 0.68 0.887542
Target:  5'- cCGCGGaAGCCCGCGCGAgguGUGCga-GGg -3'
miRNA:   3'- -GUGUUgUCGGGCGCGUU---CGCGaagUC- -5'
11061 5' -55.4 NC_002794.1 + 62338 0.7 0.799984
Target:  5'- gGCGG-AGCCCGCGCcGGCGCa---- -3'
miRNA:   3'- gUGUUgUCGGGCGCGuUCGCGaaguc -5'
11061 5' -55.4 NC_002794.1 + 63516 0.7 0.763063
Target:  5'- cCGCGACGccuCCCGCGCGAGcCGCcUCGc -3'
miRNA:   3'- -GUGUUGUc--GGGCGCGUUC-GCGaAGUc -5'
11061 5' -55.4 NC_002794.1 + 70540 0.68 0.880597
Target:  5'- aACAGCAGCCgaucgUGCGCcucGAGcCGCUcCAGa -3'
miRNA:   3'- gUGUUGUCGG-----GCGCG---UUC-GCGAaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.