miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11061 5' -55.4 NC_002794.1 + 195226 0.8 0.287636
Target:  5'- gGCAGCAGCCCGCGC-GGCGUcacCAGc -3'
miRNA:   3'- gUGUUGUCGGGCGCGuUCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 195174 0.69 0.842669
Target:  5'- -cCAGCucuccuuGCCCGgGCAcAGCGCcgUCAGg -3'
miRNA:   3'- guGUUGu------CGGGCgCGU-UCGCGa-AGUC- -5'
11061 5' -55.4 NC_002794.1 + 193358 0.69 0.826116
Target:  5'- aCACAGCAGCCgGUGCcacgggccGCGCUccUCGc -3'
miRNA:   3'- -GUGUUGUCGGgCGCGuu------CGCGA--AGUc -5'
11061 5' -55.4 NC_002794.1 + 193170 0.72 0.674099
Target:  5'- aGCAcCAGCCCGCGCcgcgccAGCGUgucCAGg -3'
miRNA:   3'- gUGUuGUCGGGCGCGu-----UCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 192423 0.67 0.907011
Target:  5'- cCGCGACgGGUCCGCGgCcGGCGCgUCGc -3'
miRNA:   3'- -GUGUUG-UCGGGCGC-GuUCGCGaAGUc -5'
11061 5' -55.4 NC_002794.1 + 191651 0.67 0.900752
Target:  5'- -cCAGCAGCCCGC-CGggggacGGCGCcggCAGc -3'
miRNA:   3'- guGUUGUCGGGCGcGU------UCGCGaa-GUC- -5'
11061 5' -55.4 NC_002794.1 + 191527 0.66 0.934752
Target:  5'- gGCGuCGGCCCGCGCcuccCGCcgCAGu -3'
miRNA:   3'- gUGUuGUCGGGCGCGuuc-GCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 190946 0.66 0.939585
Target:  5'- aGC-ACGGCCCcaGCaGCAccAGCGCcUCGGg -3'
miRNA:   3'- gUGuUGUCGGG--CG-CGU--UCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 190201 0.69 0.817571
Target:  5'- gCGCucCAGCgCCGCGCGcacccgccgGGCGCUcCGGu -3'
miRNA:   3'- -GUGuuGUCG-GGCGCGU---------UCGCGAaGUC- -5'
11061 5' -55.4 NC_002794.1 + 190023 0.67 0.913035
Target:  5'- cCAuCGGCGGCCgguaGCGCAcguAGCGCUgacUCAu -3'
miRNA:   3'- -GU-GUUGUCGGg---CGCGU---UCGCGA---AGUc -5'
11061 5' -55.4 NC_002794.1 + 189046 0.69 0.834484
Target:  5'- aGCGGCGGgCUGCGCGucgcguacGGCGUcUCGGg -3'
miRNA:   3'- gUGUUGUCgGGCGCGU--------UCGCGaAGUC- -5'
11061 5' -55.4 NC_002794.1 + 187944 0.69 0.826116
Target:  5'- uCAC-GCGuGCgCGCGCGAGCGCgggaccUCGGg -3'
miRNA:   3'- -GUGuUGU-CGgGCGCGUUCGCGa-----AGUC- -5'
11061 5' -55.4 NC_002794.1 + 187793 0.66 0.929681
Target:  5'- aGgAACGGCCCGCgaaGCGAGCGag-CGa -3'
miRNA:   3'- gUgUUGUCGGGCG---CGUUCGCgaaGUc -5'
11061 5' -55.4 NC_002794.1 + 187341 0.76 0.463962
Target:  5'- aGCAGCAGCCCGUcguucgcggucacGUAGGCGCgcagCAGc -3'
miRNA:   3'- gUGUUGUCGGGCG-------------CGUUCGCGaa--GUC- -5'
11061 5' -55.4 NC_002794.1 + 187047 0.71 0.71437
Target:  5'- uCGCAgucccggagcccGCGGCCCGC-CAGGUGCcgCAGg -3'
miRNA:   3'- -GUGU------------UGUCGGGCGcGUUCGCGaaGUC- -5'
11061 5' -55.4 NC_002794.1 + 186976 0.68 0.86605
Target:  5'- -cCAGCAGCgCGCGCAccagcuccgccGGCuGCgucgUCAGg -3'
miRNA:   3'- guGUUGUCGgGCGCGU-----------UCG-CGa---AGUC- -5'
11061 5' -55.4 NC_002794.1 + 186844 0.67 0.900752
Target:  5'- -cCGACAGC--GCGCGGGCGCUgccgugCAGc -3'
miRNA:   3'- guGUUGUCGggCGCGUUCGCGAa-----GUC- -5'
11061 5' -55.4 NC_002794.1 + 186637 0.69 0.826116
Target:  5'- gAC-ACAGCCCGCGCGGGUcgGCcgCGc -3'
miRNA:   3'- gUGuUGUCGGGCGCGUUCG--CGaaGUc -5'
11061 5' -55.4 NC_002794.1 + 185177 0.66 0.92437
Target:  5'- gCGCGgcGCGGUCgGCGCGgucGGCGCggUCAu -3'
miRNA:   3'- -GUGU--UGUCGGgCGCGU---UCGCGa-AGUc -5'
11061 5' -55.4 NC_002794.1 + 185070 0.68 0.857688
Target:  5'- cCGCcGCGGCCCGUcgccguaGCAGGCGUacCAGc -3'
miRNA:   3'- -GUGuUGUCGGGCG-------CGUUCGCGaaGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.