miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11064 3' -59.7 NC_002794.1 + 131301 0.65 0.848071
Target:  5'- cCGCCGcCCGUGGUCGucACCUcgcccuggguggCCGGCu -3'
miRNA:   3'- -GCGGC-GGCGCCAGCc-UGGAa-----------GGUUGu -5'
11064 3' -59.7 NC_002794.1 + 81344 0.66 0.841944
Target:  5'- cCGCCGUCGCcGaCGGGCaugaugCCGACGu -3'
miRNA:   3'- -GCGGCGGCGcCaGCCUGgaa---GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 113929 0.66 0.841944
Target:  5'- gGCCGCCGaGGcgaCGGGCCgcugccgggcUUCCuGCAg -3'
miRNA:   3'- gCGGCGGCgCCa--GCCUGG----------AAGGuUGU- -5'
11064 3' -59.7 NC_002794.1 + 183610 0.66 0.841944
Target:  5'- gGCCGCgCGCGGcCGGcGCCcccgcgcccCCGACu -3'
miRNA:   3'- gCGGCG-GCGCCaGCC-UGGaa-------GGUUGu -5'
11064 3' -59.7 NC_002794.1 + 111126 0.66 0.841944
Target:  5'- aCGgCGCCgGCGGcCGGugCU-CCAcGCGg -3'
miRNA:   3'- -GCgGCGG-CGCCaGCCugGAaGGU-UGU- -5'
11064 3' -59.7 NC_002794.1 + 186373 0.66 0.841944
Target:  5'- cCGCCGCCGCcGUCGucGCCgcagCC-GCAg -3'
miRNA:   3'- -GCGGCGGCGcCAGCc-UGGaa--GGuUGU- -5'
11064 3' -59.7 NC_002794.1 + 42566 0.66 0.841944
Target:  5'- gCGaCC-CCGCGG-CGGACCcgCgGACGg -3'
miRNA:   3'- -GC-GGcGGCGCCaGCCUGGaaGgUUGU- -5'
11064 3' -59.7 NC_002794.1 + 41676 0.66 0.834129
Target:  5'- gGCCGCCGCaGGagcgccCGGACCg-CCGGa- -3'
miRNA:   3'- gCGGCGGCG-CCa-----GCCUGGaaGGUUgu -5'
11064 3' -59.7 NC_002794.1 + 67853 0.66 0.834129
Target:  5'- gCGCCGCCGCGcGUcaccCGGcGCCaUCCcgaAGCu -3'
miRNA:   3'- -GCGGCGGCGC-CA----GCC-UGGaAGG---UUGu -5'
11064 3' -59.7 NC_002794.1 + 127188 0.66 0.834129
Target:  5'- uCGUCGCCGCGGcCGcaGCCg--CAGCAg -3'
miRNA:   3'- -GCGGCGGCGCCaGCc-UGGaagGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 102415 0.66 0.834129
Target:  5'- aCGCgGCCGUGGcCGaGGCCg-CCAcgcGCAu -3'
miRNA:   3'- -GCGgCGGCGCCaGC-CUGGaaGGU---UGU- -5'
11064 3' -59.7 NC_002794.1 + 36161 0.66 0.834129
Target:  5'- cCGCCGCCucccccccacccGCGcccCGGGCCg-CCAGCAu -3'
miRNA:   3'- -GCGGCGG------------CGCca-GCCUGGaaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 135529 0.66 0.834129
Target:  5'- uCGCgCGCCGCucGGUCGccGACCgaCCGAa- -3'
miRNA:   3'- -GCG-GCGGCG--CCAGC--CUGGaaGGUUgu -5'
11064 3' -59.7 NC_002794.1 + 117376 0.66 0.826148
Target:  5'- gGCCGCCugcacggucGCGGcgaagCGGGCCU-CCAcCGu -3'
miRNA:   3'- gCGGCGG---------CGCCa----GCCUGGAaGGUuGU- -5'
11064 3' -59.7 NC_002794.1 + 47296 0.66 0.826148
Target:  5'- uCGCC-CCGaGGUCGGuuuuUCUUCCGAgGg -3'
miRNA:   3'- -GCGGcGGCgCCAGCCu---GGAAGGUUgU- -5'
11064 3' -59.7 NC_002794.1 + 90390 0.66 0.826148
Target:  5'- uCGCCGuCCGCGaUCGGGCUgcacgUgAGCAu -3'
miRNA:   3'- -GCGGC-GGCGCcAGCCUGGaa---GgUUGU- -5'
11064 3' -59.7 NC_002794.1 + 19528 0.66 0.826148
Target:  5'- gCGCCGgCGCGG-CGcGGCCcgCCggUg -3'
miRNA:   3'- -GCGGCgGCGCCaGC-CUGGaaGGuuGu -5'
11064 3' -59.7 NC_002794.1 + 134924 0.66 0.826148
Target:  5'- uCGCCGCCggGCGGaCGGGCUaUCUg--- -3'
miRNA:   3'- -GCGGCGG--CGCCaGCCUGGaAGGuugu -5'
11064 3' -59.7 NC_002794.1 + 141559 0.66 0.826148
Target:  5'- cCGCCacCCGCGGcCGcGGCCU-CCGugAu -3'
miRNA:   3'- -GCGGc-GGCGCCaGC-CUGGAaGGUugU- -5'
11064 3' -59.7 NC_002794.1 + 44701 0.66 0.821282
Target:  5'- cCGCCGCC-CGGcCGcGACCgcggcgacgucggCCGGCGc -3'
miRNA:   3'- -GCGGCGGcGCCaGC-CUGGaa-----------GGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.