Results 1 - 20 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11064 | 3' | -59.7 | NC_002794.1 | + | 131301 | 0.65 | 0.848071 |
Target: 5'- cCGCCGcCCGUGGUCGucACCUcgcccuggguggCCGGCu -3' miRNA: 3'- -GCGGC-GGCGCCAGCc-UGGAa-----------GGUUGu -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 44701 | 0.66 | 0.821282 |
Target: 5'- cCGCCGCC-CGGcCGcGACCgcggcgacgucggCCGGCGc -3' miRNA: 3'- -GCGGCGGcGCCaGC-CUGGaa-----------GGUUGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 41676 | 0.66 | 0.834129 |
Target: 5'- gGCCGCCGCaGGagcgccCGGACCg-CCGGa- -3' miRNA: 3'- gCGGCGGCG-CCa-----GCCUGGaaGGUUgu -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 141559 | 0.66 | 0.826148 |
Target: 5'- cCGCCacCCGCGGcCGcGGCCU-CCGugAu -3' miRNA: 3'- -GCGGc-GGCGCCaGC-CUGGAaGGUugU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 134924 | 0.66 | 0.826148 |
Target: 5'- uCGCCGCCggGCGGaCGGGCUaUCUg--- -3' miRNA: 3'- -GCGGCGG--CGCCaGCCUGGaAGGuugu -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 19528 | 0.66 | 0.826148 |
Target: 5'- gCGCCGgCGCGG-CGcGGCCcgCCggUg -3' miRNA: 3'- -GCGGCgGCGCCaGC-CUGGaaGGuuGu -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 90390 | 0.66 | 0.826148 |
Target: 5'- uCGCCGuCCGCGaUCGGGCUgcacgUgAGCAu -3' miRNA: 3'- -GCGGC-GGCGCcAGCCUGGaa---GgUUGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 47296 | 0.66 | 0.826148 |
Target: 5'- uCGCC-CCGaGGUCGGuuuuUCUUCCGAgGg -3' miRNA: 3'- -GCGGcGGCgCCAGCCu---GGAAGGUUgU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 117376 | 0.66 | 0.826148 |
Target: 5'- gGCCGCCugcacggucGCGGcgaagCGGGCCU-CCAcCGu -3' miRNA: 3'- gCGGCGG---------CGCCa----GCCUGGAaGGUuGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 102795 | 0.66 | 0.821282 |
Target: 5'- aCGCCGCCaaguacuucgagcagGUGGUCaaGGCCgugaCCAACAc -3' miRNA: 3'- -GCGGCGG---------------CGCCAGc-CUGGaa--GGUUGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 67853 | 0.66 | 0.834129 |
Target: 5'- gCGCCGCCGCGcGUcaccCGGcGCCaUCCcgaAGCu -3' miRNA: 3'- -GCGGCGGCGC-CA----GCC-UGGaAGG---UUGu -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 127188 | 0.66 | 0.834129 |
Target: 5'- uCGUCGCCGCGGcCGcaGCCg--CAGCAg -3' miRNA: 3'- -GCGGCGGCGCCaGCc-UGGaagGUUGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 42566 | 0.66 | 0.841944 |
Target: 5'- gCGaCC-CCGCGG-CGGACCcgCgGACGg -3' miRNA: 3'- -GC-GGcGGCGCCaGCCUGGaaGgUUGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 186373 | 0.66 | 0.841944 |
Target: 5'- cCGCCGCCGCcGUCGucGCCgcagCC-GCAg -3' miRNA: 3'- -GCGGCGGCGcCAGCc-UGGaa--GGuUGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 111126 | 0.66 | 0.841944 |
Target: 5'- aCGgCGCCgGCGGcCGGugCU-CCAcGCGg -3' miRNA: 3'- -GCgGCGG-CGCCaGCCugGAaGGU-UGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 183610 | 0.66 | 0.841944 |
Target: 5'- gGCCGCgCGCGGcCGGcGCCcccgcgcccCCGACu -3' miRNA: 3'- gCGGCG-GCGCCaGCC-UGGaa-------GGUUGu -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 135529 | 0.66 | 0.834129 |
Target: 5'- uCGCgCGCCGCucGGUCGccGACCgaCCGAa- -3' miRNA: 3'- -GCG-GCGGCG--CCAGC--CUGGaaGGUUgu -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 36161 | 0.66 | 0.834129 |
Target: 5'- cCGCCGCCucccccccacccGCGcccCGGGCCg-CCAGCAu -3' miRNA: 3'- -GCGGCGG------------CGCca-GCCUGGaaGGUUGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 113929 | 0.66 | 0.841944 |
Target: 5'- gGCCGCCGaGGcgaCGGGCCgcugccgggcUUCCuGCAg -3' miRNA: 3'- gCGGCGGCgCCa--GCCUGG----------AAGGuUGU- -5' |
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11064 | 3' | -59.7 | NC_002794.1 | + | 102415 | 0.66 | 0.834129 |
Target: 5'- aCGCgGCCGUGGcCGaGGCCg-CCAcgcGCAu -3' miRNA: 3'- -GCGgCGGCGCCaGC-CUGGaaGGU---UGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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