miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11064 3' -59.7 NC_002794.1 + 12186 0.79 0.189325
Target:  5'- aCGCCGCCGCGGccgggcgccgcUCGGACgUgCCGGCGg -3'
miRNA:   3'- -GCGGCGGCGCC-----------AGCCUGgAaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 129511 0.78 0.223283
Target:  5'- uCGCCGCCGCGGUCGGcGCg--CUGACAc -3'
miRNA:   3'- -GCGGCGGCGCCAGCC-UGgaaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 32298 0.78 0.233895
Target:  5'- cCGCCGCCGCGG-CGG-CCgcgCCGGCc -3'
miRNA:   3'- -GCGGCGGCGCCaGCCuGGaa-GGUUGu -5'
11064 3' -59.7 NC_002794.1 + 186112 0.78 0.239359
Target:  5'- uCGCCGCCGcCGGgucccCGGAUCU-CCAGCAc -3'
miRNA:   3'- -GCGGCGGC-GCCa----GCCUGGAaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 61553 0.77 0.25639
Target:  5'- aCGCCGCCGCGG-CGGcgGCCgccgUCgAACAc -3'
miRNA:   3'- -GCGGCGGCGCCaGCC--UGGa---AGgUUGU- -5'
11064 3' -59.7 NC_002794.1 + 145194 0.77 0.25639
Target:  5'- gGUCGCCGCGG-CGG-CCcUCCGGCAg -3'
miRNA:   3'- gCGGCGGCGCCaGCCuGGaAGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 105505 0.77 0.268286
Target:  5'- cCGCCGCCGcCGGUCGcGCCgUCCGAa- -3'
miRNA:   3'- -GCGGCGGC-GCCAGCcUGGaAGGUUgu -5'
11064 3' -59.7 NC_002794.1 + 36 0.77 0.280625
Target:  5'- gGCCGCCGCGGgcucUCGGACgaacggCCGACGc -3'
miRNA:   3'- gCGGCGGCGCC----AGCCUGgaa---GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 121256 0.76 0.29341
Target:  5'- cCGCCGCCGCGGccUCGGcACCgUCCuGGCu -3'
miRNA:   3'- -GCGGCGGCGCC--AGCC-UGGaAGG-UUGu -5'
11064 3' -59.7 NC_002794.1 + 181782 0.76 0.313432
Target:  5'- gCGCCGCCGCGucucguUCGGGCCUuggaUCCAGa- -3'
miRNA:   3'- -GCGGCGGCGCc-----AGCCUGGA----AGGUUgu -5'
11064 3' -59.7 NC_002794.1 + 34255 0.75 0.338803
Target:  5'- uGCCGCCGCaGG-CGGACCgcgcgcaggcggCCAGCGc -3'
miRNA:   3'- gCGGCGGCG-CCaGCCUGGaa----------GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 72919 0.75 0.349064
Target:  5'- uCGCCGCCGCcGUCGGAgCCggcgUCCGcGCGc -3'
miRNA:   3'- -GCGGCGGCGcCAGCCU-GGa---AGGU-UGU- -5'
11064 3' -59.7 NC_002794.1 + 104442 0.74 0.379585
Target:  5'- aCGCCGCCGCGGgCGGcCCgagCCcgGGCGg -3'
miRNA:   3'- -GCGGCGGCGCCaGCCuGGaa-GG--UUGU- -5'
11064 3' -59.7 NC_002794.1 + 151596 0.74 0.387489
Target:  5'- cCGCCGCCGCGGgcccgCGGuuCCUcggCUGACGg -3'
miRNA:   3'- -GCGGCGGCGCCa----GCCu-GGAa--GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 115326 0.73 0.420168
Target:  5'- gGUCGCCGCGGcgucCGGGCCgcUCGGCAc -3'
miRNA:   3'- gCGGCGGCGCCa---GCCUGGaaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 82381 0.73 0.428595
Target:  5'- -aCCGCCGCGG-CGGACCgcggcgCCcACAa -3'
miRNA:   3'- gcGGCGGCGCCaGCCUGGaa----GGuUGU- -5'
11064 3' -59.7 NC_002794.1 + 185354 0.73 0.428595
Target:  5'- gCGCCGCCGCGaG-CGGGCCgaacgCCGcgaGCGa -3'
miRNA:   3'- -GCGGCGGCGC-CaGCCUGGaa---GGU---UGU- -5'
11064 3' -59.7 NC_002794.1 + 111634 0.73 0.437121
Target:  5'- gGCCGCCGcCGGUCGGGCg--CCG-CGg -3'
miRNA:   3'- gCGGCGGC-GCCAGCCUGgaaGGUuGU- -5'
11064 3' -59.7 NC_002794.1 + 32607 0.73 0.45446
Target:  5'- gGCCgggGCCGgGGaUCGGGCCcgCCGACGa -3'
miRNA:   3'- gCGG---CGGCgCC-AGCCUGGaaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 66033 0.72 0.481147
Target:  5'- uCGCCGUCGUcGUCGGGCCgg-CAGCGg -3'
miRNA:   3'- -GCGGCGGCGcCAGCCUGGaagGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.