miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11064 3' -59.7 NC_002794.1 + 102795 0.66 0.821282
Target:  5'- aCGCCGCCaaguacuucgagcagGUGGUCaaGGCCgugaCCAACAc -3'
miRNA:   3'- -GCGGCGG---------------CGCCAGc-CUGGaa--GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 115592 0.66 0.818007
Target:  5'- aGCgGCUGCGGUCG-ACCcgcucgcCCGGCGc -3'
miRNA:   3'- gCGgCGGCGCCAGCcUGGaa-----GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 70054 0.66 0.818007
Target:  5'- gGUCGCC-CGGUCGGgcgGCCgcagCCGcaGCAa -3'
miRNA:   3'- gCGGCGGcGCCAGCC---UGGaa--GGU--UGU- -5'
11064 3' -59.7 NC_002794.1 + 90996 0.66 0.818007
Target:  5'- gGCCGagGCGGagCGGGCCgacaCCGACu -3'
miRNA:   3'- gCGGCggCGCCa-GCCUGGaa--GGUUGu -5'
11064 3' -59.7 NC_002794.1 + 149242 0.66 0.818007
Target:  5'- cCGUCGCCGgGGUCGcGGCg--CCAcCAc -3'
miRNA:   3'- -GCGGCGGCgCCAGC-CUGgaaGGUuGU- -5'
11064 3' -59.7 NC_002794.1 + 52792 0.66 0.818007
Target:  5'- aCGCUcgaGCCGCucGUCGGACg--CCGGCAg -3'
miRNA:   3'- -GCGG---CGGCGc-CAGCCUGgaaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 106222 0.66 0.818007
Target:  5'- cCGUCGCCGCGGccgcgcUCGGgucgcagaccGCCgcgaaCCGGCGa -3'
miRNA:   3'- -GCGGCGGCGCC------AGCC----------UGGaa---GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 121920 0.66 0.818007
Target:  5'- uCGcCCGCCGCGGg-GGAagaggCCGACGc -3'
miRNA:   3'- -GC-GGCGGCGCCagCCUggaa-GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 141688 0.66 0.818007
Target:  5'- uCGCCGUaCGCGGUCccgucguGGCCgaaCCGGCGu -3'
miRNA:   3'- -GCGGCG-GCGCCAGc------CUGGaa-GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 802 0.66 0.809712
Target:  5'- uGCCGUCcggGCGGUCGGgaggggGCCUUuuccuccgguccCCGGCGc -3'
miRNA:   3'- gCGGCGG---CGCCAGCC------UGGAA------------GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 864 0.66 0.809712
Target:  5'- gCGCgCGCCcgcgagGCGGUCGGcgugcgcgcggGCCgggugCCAACGc -3'
miRNA:   3'- -GCG-GCGG------CGCCAGCC-----------UGGaa---GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 49478 0.66 0.809712
Target:  5'- gGCCGCCGCgGGUCugucGACCUcgucgCCGuCGu -3'
miRNA:   3'- gCGGCGGCG-CCAGc---CUGGAa----GGUuGU- -5'
11064 3' -59.7 NC_002794.1 + 105968 0.66 0.809712
Target:  5'- gGCCGCCGCGGaCG-AgUUUCCGGu- -3'
miRNA:   3'- gCGGCGGCGCCaGCcUgGAAGGUUgu -5'
11064 3' -59.7 NC_002794.1 + 141645 0.66 0.809712
Target:  5'- gGCCGgCGUGGcCGcGGCCg-CCGGCGg -3'
miRNA:   3'- gCGGCgGCGCCaGC-CUGGaaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 189777 0.66 0.809712
Target:  5'- cCGCCaGCCGCGGgaugCGGaaaucGCCgucgaaccCCGGCGg -3'
miRNA:   3'- -GCGG-CGGCGCCa---GCC-----UGGaa------GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 195572 0.66 0.808874
Target:  5'- aGCCGCCcCGaccgaccGcCGGACCggCCGACGc -3'
miRNA:   3'- gCGGCGGcGC-------CaGCCUGGaaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 42206 0.66 0.808874
Target:  5'- uCGCCGCCGcCGGUCugccgcuGGAUCagCCG-CGa -3'
miRNA:   3'- -GCGGCGGC-GCCAG-------CCUGGaaGGUuGU- -5'
11064 3' -59.7 NC_002794.1 + 105924 0.67 0.801271
Target:  5'- cCGCCGCCGcCGGaCGGGCUg---GACGc -3'
miRNA:   3'- -GCGGCGGC-GCCaGCCUGGaaggUUGU- -5'
11064 3' -59.7 NC_002794.1 + 150047 0.67 0.797855
Target:  5'- aGCCGCUaccgacuGCGGUgGGacgagcgcgcucugGCCUUCCuGCGc -3'
miRNA:   3'- gCGGCGG-------CGCCAgCC--------------UGGAAGGuUGU- -5'
11064 3' -59.7 NC_002794.1 + 23721 0.67 0.792691
Target:  5'- -aCCGCgCGCGG-CGGgcccgacguACCUUCCGAUc -3'
miRNA:   3'- gcGGCG-GCGCCaGCC---------UGGAAGGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.