miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11064 3' -59.7 NC_002794.1 + 36 0.77 0.280625
Target:  5'- gGCCGCCGCGGgcucUCGGACgaacggCCGACGc -3'
miRNA:   3'- gCGGCGGCGCC----AGCCUGgaa---GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 260 0.67 0.775145
Target:  5'- uGCCGCCGCGcGcgCGGACgCgaggaCGGCGg -3'
miRNA:   3'- gCGGCGGCGC-Ca-GCCUG-Gaag--GUUGU- -5'
11064 3' -59.7 NC_002794.1 + 802 0.66 0.809712
Target:  5'- uGCCGUCcggGCGGUCGGgaggggGCCUUuuccuccgguccCCGGCGc -3'
miRNA:   3'- gCGGCGG---CGCCAGCC------UGGAA------------GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 864 0.66 0.809712
Target:  5'- gCGCgCGCCcgcgagGCGGUCGGcgugcgcgcggGCCgggugCCAACGc -3'
miRNA:   3'- -GCG-GCGG------CGCCAGCC-----------UGGaa---GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 11080 0.67 0.757134
Target:  5'- aCGCCGCCuGCcucgucGUCGGcgccACCUUCCuGCu -3'
miRNA:   3'- -GCGGCGG-CGc-----CAGCC----UGGAAGGuUGu -5'
11064 3' -59.7 NC_002794.1 + 11809 0.67 0.766194
Target:  5'- cCGCCGCCGCcGUCGccGCCUUCg---- -3'
miRNA:   3'- -GCGGCGGCGcCAGCc-UGGAAGguugu -5'
11064 3' -59.7 NC_002794.1 + 12186 0.79 0.189325
Target:  5'- aCGCCGCCGCGGccgggcgccgcUCGGACgUgCCGGCGg -3'
miRNA:   3'- -GCGGCGGCGCC-----------AGCCUGgAaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 14654 0.67 0.757134
Target:  5'- cCGgCGCCGCGGcgUCGGuCCgacUCgCGGCGg -3'
miRNA:   3'- -GCgGCGGCGCC--AGCCuGGa--AG-GUUGU- -5'
11064 3' -59.7 NC_002794.1 + 14716 0.67 0.766194
Target:  5'- gCGCUGCuCGCGGcuUCGGcUCggggUCCGGCGc -3'
miRNA:   3'- -GCGGCG-GCGCC--AGCCuGGa---AGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 16306 0.67 0.792691
Target:  5'- gGCgGCCGCGGcCGGcuggaucccccuGCCccuggCCGGCAc -3'
miRNA:   3'- gCGgCGGCGCCaGCC------------UGGaa---GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 17287 0.7 0.594181
Target:  5'- cCGCCGCCGaCGGUCacGACgaUCaCGACGg -3'
miRNA:   3'- -GCGGCGGC-GCCAGc-CUGgaAG-GUUGU- -5'
11064 3' -59.7 NC_002794.1 + 17437 0.68 0.710494
Target:  5'- gCGCCGCCgGCGcUCGGGCCcgcgaCCGAg- -3'
miRNA:   3'- -GCGGCGG-CGCcAGCCUGGaa---GGUUgu -5'
11064 3' -59.7 NC_002794.1 + 17644 0.67 0.78398
Target:  5'- cCGCCGCCGCGGcCGccgccACCgccgCCAcCGc -3'
miRNA:   3'- -GCGGCGGCGCCaGCc----UGGaa--GGUuGU- -5'
11064 3' -59.7 NC_002794.1 + 18705 0.68 0.738723
Target:  5'- gGCgGCgGCGGUcCGGACgUcggagCCGACGa -3'
miRNA:   3'- gCGgCGgCGCCA-GCCUGgAa----GGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 19528 0.66 0.826148
Target:  5'- gCGCCGgCGCGG-CGcGGCCcgCCggUg -3'
miRNA:   3'- -GCGGCgGCGCCaGC-CUGGaaGGuuGu -5'
11064 3' -59.7 NC_002794.1 + 23721 0.67 0.792691
Target:  5'- -aCCGCgCGCGG-CGGgcccgacguACCUUCCGAUc -3'
miRNA:   3'- gcGGCG-GCGCCaGCC---------UGGAAGGUUGu -5'
11064 3' -59.7 NC_002794.1 + 32298 0.78 0.233895
Target:  5'- cCGCCGCCGCGG-CGG-CCgcgCCGGCc -3'
miRNA:   3'- -GCGGCGGCGCCaGCCuGGaa-GGUUGu -5'
11064 3' -59.7 NC_002794.1 + 32607 0.73 0.45446
Target:  5'- gGCCgggGCCGgGGaUCGGGCCcgCCGACGa -3'
miRNA:   3'- gCGG---CGGCgCC-AGCCUGGaaGGUUGU- -5'
11064 3' -59.7 NC_002794.1 + 34038 0.67 0.766194
Target:  5'- aGCCGCCuGCuGcCGGGCCggCCcGCGc -3'
miRNA:   3'- gCGGCGG-CGcCaGCCUGGaaGGuUGU- -5'
11064 3' -59.7 NC_002794.1 + 34255 0.75 0.338803
Target:  5'- uGCCGCCGCaGG-CGGACCgcgcgcaggcggCCAGCGc -3'
miRNA:   3'- gCGGCGGCG-CCaGCCUGGaa----------GGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.