miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11064 5' -54 NC_002794.1 + 113824 0.66 0.984806
Target:  5'- gCGgcgCUCGGCcUCCAGGuGCuucuGCaGCCu -3'
miRNA:   3'- -GCaa-GAGCUGcAGGUCCuUGu---CG-CGG- -5'
11064 5' -54 NC_002794.1 + 42596 0.66 0.984806
Target:  5'- aGggCgCGGCGgCCGGGAGCGG-GCUc -3'
miRNA:   3'- gCaaGaGCUGCaGGUCCUUGUCgCGG- -5'
11064 5' -54 NC_002794.1 + 50581 0.66 0.984806
Target:  5'- gCGUgcgCGGCGgCUGGGuggcCGGCGCCg -3'
miRNA:   3'- -GCAagaGCUGCaGGUCCuu--GUCGCGG- -5'
11064 5' -54 NC_002794.1 + 146627 0.66 0.984806
Target:  5'- aCG-UCgaaGGCGguaCCGGGAGCGGCGaCg -3'
miRNA:   3'- -GCaAGag-CUGCa--GGUCCUUGUCGCgG- -5'
11064 5' -54 NC_002794.1 + 67214 0.66 0.984806
Target:  5'- gGUgcgCUCGGCG-CCGGGcggcuAACcGCGUCu -3'
miRNA:   3'- gCAa--GAGCUGCaGGUCC-----UUGuCGCGG- -5'
11064 5' -54 NC_002794.1 + 67392 0.66 0.984806
Target:  5'- ----gUCGGCG-CCAGcguCGGCGCCa -3'
miRNA:   3'- gcaagAGCUGCaGGUCcuuGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 143526 0.66 0.984806
Target:  5'- aCGUcgCcCG-CGUCCAGGA--GGCGCg -3'
miRNA:   3'- -GCAa-GaGCuGCAGGUCCUugUCGCGg -5'
11064 5' -54 NC_002794.1 + 91205 0.66 0.984806
Target:  5'- uGUUCgcggacggCGACGcgaCGGcGGACGGCGCg -3'
miRNA:   3'- gCAAGa-------GCUGCag-GUC-CUUGUCGCGg -5'
11064 5' -54 NC_002794.1 + 5017 0.66 0.984806
Target:  5'- uCGgaCUCG-CGUCCGGGGugGGgGg- -3'
miRNA:   3'- -GCaaGAGCuGCAGGUCCUugUCgCgg -5'
11064 5' -54 NC_002794.1 + 154289 0.66 0.984632
Target:  5'- gCGcggCUCGACGgucgaaucgagccUCCucGGGAgaGCGGCGUCg -3'
miRNA:   3'- -GCaa-GAGCUGC-------------AGG--UCCU--UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 62482 0.66 0.984098
Target:  5'- ---cCUCGACGagcgcgaguggaCGGcGGGCGGCGCCg -3'
miRNA:   3'- gcaaGAGCUGCag----------GUC-CUUGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 12816 0.66 0.982988
Target:  5'- cCGUgCUCGAgGUCUAccccGAGCAGUcguGCCa -3'
miRNA:   3'- -GCAaGAGCUgCAGGUc---CUUGUCG---CGG- -5'
11064 5' -54 NC_002794.1 + 127318 0.66 0.982988
Target:  5'- cCG-UCUCGACGa-CGGaGACgAGCGCCg -3'
miRNA:   3'- -GCaAGAGCUGCagGUCcUUG-UCGCGG- -5'
11064 5' -54 NC_002794.1 + 190718 0.66 0.982988
Target:  5'- gGUUCUCca-G-CCGGaGAcGCAGCGCCc -3'
miRNA:   3'- gCAAGAGcugCaGGUC-CU-UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 112318 0.66 0.982988
Target:  5'- uCGgcgC-CGACGgCgGGGAGC-GCGCCg -3'
miRNA:   3'- -GCaa-GaGCUGCaGgUCCUUGuCGCGG- -5'
11064 5' -54 NC_002794.1 + 53042 0.66 0.982988
Target:  5'- cCGUggugCcgCGGC-UCCAGcGuagGCAGCGCCg -3'
miRNA:   3'- -GCAa---Ga-GCUGcAGGUC-Cu--UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 114900 0.66 0.981821
Target:  5'- gGUccgCUCGAggagcgcguguagcuCGUCCGaGGGCAGCGUCc -3'
miRNA:   3'- gCAa--GAGCU---------------GCAGGUcCUUGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 10615 0.66 0.981215
Target:  5'- gGUuagCUCGuCGUCaacaugccacgggcgGGGAGCGGCGCg -3'
miRNA:   3'- gCAa--GAGCuGCAGg--------------UCCUUGUCGCGg -5'
11064 5' -54 NC_002794.1 + 44258 0.66 0.98101
Target:  5'- cCGggcggCUCGGcCG-CCGGGGACGgaggaguccGCGCCc -3'
miRNA:   3'- -GCaa---GAGCU-GCaGGUCCUUGU---------CGCGG- -5'
11064 5' -54 NC_002794.1 + 119373 0.66 0.98101
Target:  5'- uCGUUCgCGugGUCgAGcuGGGCcagcaccuGGCGCCg -3'
miRNA:   3'- -GCAAGaGCugCAGgUC--CUUG--------UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.