Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11064 | 5' | -54 | NC_002794.1 | + | 119373 | 0.66 | 0.98101 |
Target: 5'- uCGUUCgCGugGUCgAGcuGGGCcagcaccuGGCGCCg -3' miRNA: 3'- -GCAAGaGCugCAGgUC--CUUG--------UCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 127318 | 0.66 | 0.982988 |
Target: 5'- cCG-UCUCGACGa-CGGaGACgAGCGCCg -3' miRNA: 3'- -GCaAGAGCUGCagGUCcUUG-UCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 190718 | 0.66 | 0.982988 |
Target: 5'- gGUUCUCca-G-CCGGaGAcGCAGCGCCc -3' miRNA: 3'- gCAAGAGcugCaGGUC-CU-UGUCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 112318 | 0.66 | 0.982988 |
Target: 5'- uCGgcgC-CGACGgCgGGGAGC-GCGCCg -3' miRNA: 3'- -GCaa-GaGCUGCaGgUCCUUGuCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 114900 | 0.66 | 0.981821 |
Target: 5'- gGUccgCUCGAggagcgcguguagcuCGUCCGaGGGCAGCGUCc -3' miRNA: 3'- gCAa--GAGCU---------------GCAGGUcCUUGUCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 53042 | 0.66 | 0.982988 |
Target: 5'- cCGUggugCcgCGGC-UCCAGcGuagGCAGCGCCg -3' miRNA: 3'- -GCAa---Ga-GCUGcAGGUC-Cu--UGUCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 63406 | 0.66 | 0.98101 |
Target: 5'- cCGUUUccCGACGgCCGGacggacGAugAGCGCCc -3' miRNA: 3'- -GCAAGa-GCUGCaGGUC------CUugUCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 10615 | 0.66 | 0.981215 |
Target: 5'- gGUuagCUCGuCGUCaacaugccacgggcgGGGAGCGGCGCg -3' miRNA: 3'- gCAa--GAGCuGCAGg--------------UCCUUGUCGCGg -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 44258 | 0.66 | 0.98101 |
Target: 5'- cCGggcggCUCGGcCG-CCGGGGACGgaggaguccGCGCCc -3' miRNA: 3'- -GCaa---GAGCU-GCaGGUCCUUGU---------CGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 62482 | 0.66 | 0.984098 |
Target: 5'- ---cCUCGACGagcgcgaguggaCGGcGGGCGGCGCCg -3' miRNA: 3'- gcaaGAGCUGCag----------GUC-CUUGUCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 154289 | 0.66 | 0.984632 |
Target: 5'- gCGcggCUCGACGgucgaaucgagccUCCucGGGAgaGCGGCGUCg -3' miRNA: 3'- -GCaa-GAGCUGC-------------AGG--UCCU--UGUCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 12816 | 0.66 | 0.982988 |
Target: 5'- cCGUgCUCGAgGUCUAccccGAGCAGUcguGCCa -3' miRNA: 3'- -GCAaGAGCUgCAGGUc---CUUGUCG---CGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 5017 | 0.66 | 0.984806 |
Target: 5'- uCGgaCUCG-CGUCCGGGGugGGgGg- -3' miRNA: 3'- -GCaaGAGCuGCAGGUCCUugUCgCgg -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 91205 | 0.66 | 0.984806 |
Target: 5'- uGUUCgcggacggCGACGcgaCGGcGGACGGCGCg -3' miRNA: 3'- gCAAGa-------GCUGCag-GUC-CUUGUCGCGg -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 143526 | 0.66 | 0.984806 |
Target: 5'- aCGUcgCcCG-CGUCCAGGA--GGCGCg -3' miRNA: 3'- -GCAa-GaGCuGCAGGUCCUugUCGCGg -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 67392 | 0.66 | 0.984806 |
Target: 5'- ----gUCGGCG-CCAGcguCGGCGCCa -3' miRNA: 3'- gcaagAGCUGCaGGUCcuuGUCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 67214 | 0.66 | 0.984806 |
Target: 5'- gGUgcgCUCGGCG-CCGGGcggcuAACcGCGUCu -3' miRNA: 3'- gCAa--GAGCUGCaGGUCC-----UUGuCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 146627 | 0.66 | 0.984806 |
Target: 5'- aCG-UCgaaGGCGguaCCGGGAGCGGCGaCg -3' miRNA: 3'- -GCaAGag-CUGCa--GGUCCUUGUCGCgG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 50581 | 0.66 | 0.984806 |
Target: 5'- gCGUgcgCGGCGgCUGGGuggcCGGCGCCg -3' miRNA: 3'- -GCAagaGCUGCaGGUCCuu--GUCGCGG- -5' |
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11064 | 5' | -54 | NC_002794.1 | + | 42596 | 0.66 | 0.984806 |
Target: 5'- aGggCgCGGCGgCCGGGAGCGG-GCUc -3' miRNA: 3'- gCaaGaGCUGCaGGUCCUUGUCgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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