miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11064 5' -54 NC_002794.1 + 93561 0.79 0.450992
Target:  5'- aGUaCUCGACGUCCGGGggUAGC-Cg -3'
miRNA:   3'- gCAaGAGCUGCAGGUCCuuGUCGcGg -5'
11064 5' -54 NC_002794.1 + 114387 0.79 0.460052
Target:  5'- aGgcCUUGACGUCCuugugauGGAGCAGCGCg -3'
miRNA:   3'- gCaaGAGCUGCAGGu------CCUUGUCGCGg -5'
11064 5' -54 NC_002794.1 + 123805 0.78 0.487791
Target:  5'- cCGUUCgggggcgCgGACGagCAGGAGCGGCGCCc -3'
miRNA:   3'- -GCAAGa------G-CUGCagGUCCUUGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 113658 0.77 0.525945
Target:  5'- gCGUcCUCGGCGUCCAGcgcggcGAGCAGgccCGCCa -3'
miRNA:   3'- -GCAaGAGCUGCAGGUC------CUUGUC---GCGG- -5'
11064 5' -54 NC_002794.1 + 191642 0.77 0.565169
Target:  5'- ---cCUCGcCGUCCagcagcccgccgGGGGACGGCGCCg -3'
miRNA:   3'- gcaaGAGCuGCAGG------------UCCUUGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 103271 0.75 0.625229
Target:  5'- -----aCGAUGUCCAGGAcCAGCGCg -3'
miRNA:   3'- gcaagaGCUGCAGGUCCUuGUCGCGg -5'
11064 5' -54 NC_002794.1 + 35482 0.75 0.635298
Target:  5'- uGUUCuUCGACGUCgAGGAcCAGCagguggugGCCg -3'
miRNA:   3'- gCAAG-AGCUGCAGgUCCUuGUCG--------CGG- -5'
11064 5' -54 NC_002794.1 + 65802 0.75 0.655421
Target:  5'- gCGUUgaCGACGUCCGuuucGAuCAGCGCCg -3'
miRNA:   3'- -GCAAgaGCUGCAGGUc---CUuGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 70726 0.74 0.68545
Target:  5'- aCGcUCUCcGCcaCCAGGAGCAGCGCg -3'
miRNA:   3'- -GCaAGAGcUGcaGGUCCUUGUCGCGg -5'
11064 5' -54 NC_002794.1 + 20394 0.74 0.695385
Target:  5'- gGUg--CGGCGggaCCGGGAGCGGgGCCa -3'
miRNA:   3'- gCAagaGCUGCa--GGUCCUUGUCgCGG- -5'
11064 5' -54 NC_002794.1 + 101416 0.74 0.70231
Target:  5'- uGUUaCUCGACGuggcugcgcgacgaUCCGGGGACGccggcGCGCCc -3'
miRNA:   3'- gCAA-GAGCUGC--------------AGGUCCUUGU-----CGCGG- -5'
11064 5' -54 NC_002794.1 + 43894 0.74 0.705269
Target:  5'- cCGUcgC-CGGCGUCUcgugAGGAGCGGCGCg -3'
miRNA:   3'- -GCAa-GaGCUGCAGG----UCCUUGUCGCGg -5'
11064 5' -54 NC_002794.1 + 38069 0.74 0.705269
Target:  5'- --aUCUCGACGUCCGucucGGAcacgguCAGCGCg -3'
miRNA:   3'- gcaAGAGCUGCAGGU----CCUu-----GUCGCGg -5'
11064 5' -54 NC_002794.1 + 129322 0.74 0.72485
Target:  5'- uGUUUUCGACGcCCGGG-GCGGCGg- -3'
miRNA:   3'- gCAAGAGCUGCaGGUCCuUGUCGCgg -5'
11064 5' -54 NC_002794.1 + 16708 0.73 0.74412
Target:  5'- aGUcgCUCGcCGUCCgAGGAGuCuGCGCCg -3'
miRNA:   3'- gCAa-GAGCuGCAGG-UCCUU-GuCGCGG- -5'
11064 5' -54 NC_002794.1 + 113575 0.73 0.74412
Target:  5'- gCG-UCUCGGCGUCCuGcacGACGGCGCg -3'
miRNA:   3'- -GCaAGAGCUGCAGGuCc--UUGUCGCGg -5'
11064 5' -54 NC_002794.1 + 114128 0.73 0.74412
Target:  5'- uCGUUCUUGcCGccggCCAGGGcgcGCAGgCGCCg -3'
miRNA:   3'- -GCAAGAGCuGCa---GGUCCU---UGUC-GCGG- -5'
11064 5' -54 NC_002794.1 + 105415 0.73 0.74412
Target:  5'- --aUCUCGGCcUCCAGGGugGcCGCCg -3'
miRNA:   3'- gcaAGAGCUGcAGGUCCUugUcGCGG- -5'
11064 5' -54 NC_002794.1 + 43077 0.73 0.746028
Target:  5'- gCGUUCUcgcagcuguagcggaCGAaauccuccccgcgcuCGUCCAGGAggcgggcgagacagaACAGCGCCa -3'
miRNA:   3'- -GCAAGA---------------GCU---------------GCAGGUCCU---------------UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 51195 0.73 0.753618
Target:  5'- uCGUUCUCGuucgcuCGcCCGcGGAGCGGCcgGCCg -3'
miRNA:   3'- -GCAAGAGCu-----GCaGGU-CCUUGUCG--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.