miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11064 5' -54 NC_002794.1 + 44258 0.66 0.98101
Target:  5'- cCGggcggCUCGGcCG-CCGGGGACGgaggaguccGCGCCc -3'
miRNA:   3'- -GCaa---GAGCU-GCaGGUCCUUGU---------CGCGG- -5'
11064 5' -54 NC_002794.1 + 63406 0.66 0.98101
Target:  5'- cCGUUUccCGACGgCCGGacggacGAugAGCGCCc -3'
miRNA:   3'- -GCAAGa-GCUGCaGGUC------CUugUCGCGG- -5'
11064 5' -54 NC_002794.1 + 91734 0.66 0.980595
Target:  5'- -cUUCUCGGCGgccaacaaggugCCGGcGGGCGGCaCCg -3'
miRNA:   3'- gcAAGAGCUGCa-----------GGUC-CUUGUCGcGG- -5'
11064 5' -54 NC_002794.1 + 9093 0.66 0.979743
Target:  5'- -----gCGGCGaCCGGGAGCAGCaacagcagcagugagGCCg -3'
miRNA:   3'- gcaagaGCUGCaGGUCCUUGUCG---------------CGG- -5'
11064 5' -54 NC_002794.1 + 32576 0.66 0.978865
Target:  5'- uCGcgCgCGGCGgugCCGGGGcCGGgGCCg -3'
miRNA:   3'- -GCaaGaGCUGCa--GGUCCUuGUCgCGG- -5'
11064 5' -54 NC_002794.1 + 137406 0.66 0.978865
Target:  5'- --gUC-CGGCGUCCGcGGAcgccgcggagACcGCGCCg -3'
miRNA:   3'- gcaAGaGCUGCAGGU-CCU----------UGuCGCGG- -5'
11064 5' -54 NC_002794.1 + 137636 0.66 0.978865
Target:  5'- -----aCGACGUCCuGGcg-GGCGCCg -3'
miRNA:   3'- gcaagaGCUGCAGGuCCuugUCGCGG- -5'
11064 5' -54 NC_002794.1 + 143284 0.66 0.976545
Target:  5'- nCGgccgCUCGGgGUCgggCGGGuGCAGCGCg -3'
miRNA:   3'- -GCaa--GAGCUgCAG---GUCCuUGUCGCGg -5'
11064 5' -54 NC_002794.1 + 148082 0.66 0.976545
Target:  5'- aGUggcCUCGAg--CgAGGAGCAGCuGCCg -3'
miRNA:   3'- gCAa--GAGCUgcaGgUCCUUGUCG-CGG- -5'
11064 5' -54 NC_002794.1 + 20480 0.66 0.975814
Target:  5'- aCGUgcaCGugGUCaucaucgggCAGGAucccuaucacgacgGCAGCGCCa -3'
miRNA:   3'- -GCAagaGCugCAG---------GUCCU--------------UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 118282 0.67 0.974044
Target:  5'- -----nCGGCGU-CGGGGACcGCGCCg -3'
miRNA:   3'- gcaagaGCUGCAgGUCCUUGuCGCGG- -5'
11064 5' -54 NC_002794.1 + 145566 0.67 0.974044
Target:  5'- gGUUCgcgGACGagcgCCGacGGAGCGGCgGCCg -3'
miRNA:   3'- gCAAGag-CUGCa---GGU--CCUUGUCG-CGG- -5'
11064 5' -54 NC_002794.1 + 182024 0.67 0.974044
Target:  5'- -----cCGGCGUCCGGGccgcCGGCGaCCa -3'
miRNA:   3'- gcaagaGCUGCAGGUCCuu--GUCGC-GG- -5'
11064 5' -54 NC_002794.1 + 94791 0.67 0.971355
Target:  5'- aGUUCgagCGGCa--CGGGGaugGCAGCGCUa -3'
miRNA:   3'- gCAAGa--GCUGcagGUCCU---UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 31765 0.67 0.971355
Target:  5'- uGUaCUCGAUGugcUCCGGGGuCAGCGgUa -3'
miRNA:   3'- gCAaGAGCUGC---AGGUCCUuGUCGCgG- -5'
11064 5' -54 NC_002794.1 + 112710 0.67 0.971355
Target:  5'- -cUUCUCGcgggucugccCGUCCAGGAcgcggaaggcGCGGUGCUc -3'
miRNA:   3'- gcAAGAGCu---------GCAGGUCCU----------UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 14442 0.67 0.968471
Target:  5'- -cUUCUCGAUGcUCCGcGGGcgaccgugucgaGCGGCGCg -3'
miRNA:   3'- gcAAGAGCUGC-AGGU-CCU------------UGUCGCGg -5'
11064 5' -54 NC_002794.1 + 105601 0.67 0.968471
Target:  5'- aGUUCgucuUCGGCGgucgUCAGGcuCGGCGaCCa -3'
miRNA:   3'- gCAAG----AGCUGCa---GGUCCuuGUCGC-GG- -5'
11064 5' -54 NC_002794.1 + 55790 0.67 0.965386
Target:  5'- ----gUUGGCcUCCAGcGAgcGCAGCGCCg -3'
miRNA:   3'- gcaagAGCUGcAGGUC-CU--UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 46297 0.67 0.965386
Target:  5'- aCGUUC-CGaACGuUCCGagcgcggcGGcGACGGCGCCg -3'
miRNA:   3'- -GCAAGaGC-UGC-AGGU--------CC-UUGUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.