miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11064 5' -54 NC_002794.1 + 5017 0.66 0.984806
Target:  5'- uCGgaCUCG-CGUCCGGGGugGGgGg- -3'
miRNA:   3'- -GCaaGAGCuGCAGGUCCUugUCgCgg -5'
11064 5' -54 NC_002794.1 + 9093 0.66 0.979743
Target:  5'- -----gCGGCGaCCGGGAGCAGCaacagcagcagugagGCCg -3'
miRNA:   3'- gcaagaGCUGCaGGUCCUUGUCG---------------CGG- -5'
11064 5' -54 NC_002794.1 + 10615 0.66 0.981215
Target:  5'- gGUuagCUCGuCGUCaacaugccacgggcgGGGAGCGGCGCg -3'
miRNA:   3'- gCAa--GAGCuGCAGg--------------UCCUUGUCGCGg -5'
11064 5' -54 NC_002794.1 + 12213 0.68 0.954876
Target:  5'- aCGUgccggCGGCGUCgGcGGcgccGGCGGCGCCg -3'
miRNA:   3'- -GCAaga--GCUGCAGgU-CC----UUGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 12816 0.66 0.982988
Target:  5'- cCGUgCUCGAgGUCUAccccGAGCAGUcguGCCa -3'
miRNA:   3'- -GCAaGAGCUgCAGGUc---CUUGUCG---CGG- -5'
11064 5' -54 NC_002794.1 + 14442 0.67 0.968471
Target:  5'- -cUUCUCGAUGcUCCGcGGGcgaccgugucgaGCGGCGCg -3'
miRNA:   3'- gcAAGAGCUGC-AGGU-CCU------------UGUCGCGg -5'
11064 5' -54 NC_002794.1 + 16708 0.73 0.74412
Target:  5'- aGUcgCUCGcCGUCCgAGGAGuCuGCGCCg -3'
miRNA:   3'- gCAa-GAGCuGCAGG-UCCUU-GuCGCGG- -5'
11064 5' -54 NC_002794.1 + 20394 0.74 0.695385
Target:  5'- gGUg--CGGCGggaCCGGGAGCGGgGCCa -3'
miRNA:   3'- gCAagaGCUGCa--GGUCCUUGUCgCGG- -5'
11064 5' -54 NC_002794.1 + 20480 0.66 0.975814
Target:  5'- aCGUgcaCGugGUCaucaucgggCAGGAucccuaucacgacgGCAGCGCCa -3'
miRNA:   3'- -GCAagaGCugCAG---------GUCCU--------------UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 21704 0.71 0.833405
Target:  5'- ---cCUCGGCGUCCAcGGGcGCuGCGUCg -3'
miRNA:   3'- gcaaGAGCUGCAGGU-CCU-UGuCGCGG- -5'
11064 5' -54 NC_002794.1 + 23200 0.7 0.8859
Target:  5'- aGUUCaUCGuccaccgucACGUCCAGGGACAugaaGCCc -3'
miRNA:   3'- gCAAG-AGC---------UGCAGGUCCUUGUcg--CGG- -5'
11064 5' -54 NC_002794.1 + 30676 0.69 0.922549
Target:  5'- gCGaUCUCGcACGUCCGGcGGAC-GUGCa -3'
miRNA:   3'- -GCaAGAGC-UGCAGGUC-CUUGuCGCGg -5'
11064 5' -54 NC_002794.1 + 31765 0.67 0.971355
Target:  5'- uGUaCUCGAUGugcUCCGGGGuCAGCGgUa -3'
miRNA:   3'- gCAaGAGCUGC---AGGUCCUuGUCGCgG- -5'
11064 5' -54 NC_002794.1 + 32576 0.66 0.978865
Target:  5'- uCGcgCgCGGCGgugCCGGGGcCGGgGCCg -3'
miRNA:   3'- -GCaaGaGCUGCa--GGUCCUuGUCgCGG- -5'
11064 5' -54 NC_002794.1 + 32641 0.72 0.790485
Target:  5'- gGggggCGACGaCCGGGGcgACGGCGCCg -3'
miRNA:   3'- gCaagaGCUGCaGGUCCU--UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 33022 0.7 0.905244
Target:  5'- uCGUacCUCGACGcCCGcGGAGCcGaCGCCa -3'
miRNA:   3'- -GCAa-GAGCUGCaGGU-CCUUGuC-GCGG- -5'
11064 5' -54 NC_002794.1 + 35482 0.75 0.635298
Target:  5'- uGUUCuUCGACGUCgAGGAcCAGCagguggugGCCg -3'
miRNA:   3'- gCAAG-AGCUGCAGgUCCUuGUCG--------CGG- -5'
11064 5' -54 NC_002794.1 + 35661 0.71 0.860122
Target:  5'- cCGgUCUcCGACGuggucaacgaggucaUCCGGGAAgAGUGCCc -3'
miRNA:   3'- -GCaAGA-GCUGC---------------AGGUCCUUgUCGCGG- -5'
11064 5' -54 NC_002794.1 + 36893 0.69 0.922549
Target:  5'- gCGUgca-GAgCGUCCAGaGGucGCGGCGCCg -3'
miRNA:   3'- -GCAagagCU-GCAGGUC-CU--UGUCGCGG- -5'
11064 5' -54 NC_002794.1 + 38069 0.74 0.705269
Target:  5'- --aUCUCGACGUCCGucucGGAcacgguCAGCGCg -3'
miRNA:   3'- gcaAGAGCUGCAGGU----CCUu-----GUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.