miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11065 5' -55.5 NC_002794.1 + 150581 0.66 0.960741
Target:  5'- cGcCUGCCCUCGGGCGccCGAGgACg-- -3'
miRNA:   3'- cC-GAUGGGGGCCUGCa-GCUCaUGaag -5'
11065 5' -55.5 NC_002794.1 + 131043 0.66 0.960741
Target:  5'- cGGCUGCCgCCGauguuCGUCGAcgacgagacGUugUUCc -3'
miRNA:   3'- -CCGAUGGgGGCcu---GCAGCU---------CAugAAG- -5'
11065 5' -55.5 NC_002794.1 + 104452 0.66 0.960741
Target:  5'- gGGCgGCCcgagCCCGGGCGgCGuGUGCa-- -3'
miRNA:   3'- -CCGaUGG----GGGCCUGCaGCuCAUGaag -5'
11065 5' -55.5 NC_002794.1 + 4145 0.66 0.957181
Target:  5'- uGCgagcCCCCCGGACGaCGAGg----- -3'
miRNA:   3'- cCGau--GGGGGCCUGCaGCUCaugaag -5'
11065 5' -55.5 NC_002794.1 + 91037 0.66 0.956071
Target:  5'- gGGCgGCCCUCGGgguggacggggcgcGCGUCGucauGUACg-- -3'
miRNA:   3'- -CCGaUGGGGGCC--------------UGCAGCu---CAUGaag -5'
11065 5' -55.5 NC_002794.1 + 123926 0.66 0.949413
Target:  5'- cGGacCUGCCCCCGGGCacCGcGUACcgUCu -3'
miRNA:   3'- -CC--GAUGGGGGCCUGcaGCuCAUGa-AG- -5'
11065 5' -55.5 NC_002794.1 + 19537 0.66 0.949413
Target:  5'- cGGCgcgGCCCgCCGG-UGUCGGacccggacUGCUUCg -3'
miRNA:   3'- -CCGa--UGGG-GGCCuGCAGCUc-------AUGAAG- -5'
11065 5' -55.5 NC_002794.1 + 154214 0.67 0.945199
Target:  5'- uGGCgcgGCaaggCgUGGACcUCGAGUACUUCc -3'
miRNA:   3'- -CCGa--UGg---GgGCCUGcAGCUCAUGAAG- -5'
11065 5' -55.5 NC_002794.1 + 79965 0.67 0.931208
Target:  5'- uGGCguacgACCCCCGGcucgGCGaCGAGgagGCg-- -3'
miRNA:   3'- -CCGa----UGGGGGCC----UGCaGCUCa--UGaag -5'
11065 5' -55.5 NC_002794.1 + 123399 0.67 0.931208
Target:  5'- uGCUGCUCCgCGucGGCGUgGAGUACg-- -3'
miRNA:   3'- cCGAUGGGG-GC--CUGCAgCUCAUGaag -5'
11065 5' -55.5 NC_002794.1 + 144365 0.67 0.920195
Target:  5'- cGGCUGCCguucuacuCCCGGgugcucugcaacuGCGagGAGUGCgUCg -3'
miRNA:   3'- -CCGAUGG--------GGGCC-------------UGCagCUCAUGaAG- -5'
11065 5' -55.5 NC_002794.1 + 47347 0.68 0.915168
Target:  5'- cGGCgGCCUCCGGACGUucgcgcucaagcCGAGgcCg-- -3'
miRNA:   3'- -CCGaUGGGGGCCUGCA------------GCUCauGaag -5'
11065 5' -55.5 NC_002794.1 + 113315 0.68 0.909366
Target:  5'- cGCUACCCgCCGGGcCGUCaGGUAg--- -3'
miRNA:   3'- cCGAUGGG-GGCCU-GCAGcUCAUgaag -5'
11065 5' -55.5 NC_002794.1 + 38270 0.68 0.90334
Target:  5'- aGGCgcgGCCCCCGcgcGACGUagcugugcaGGGUACa-- -3'
miRNA:   3'- -CCGa--UGGGGGC---CUGCAg--------CUCAUGaag -5'
11065 5' -55.5 NC_002794.1 + 101604 0.68 0.890621
Target:  5'- gGGUgccgGCCCgCCGGGCGg-GGGUGCcguUUCg -3'
miRNA:   3'- -CCGa---UGGG-GGCCUGCagCUCAUG---AAG- -5'
11065 5' -55.5 NC_002794.1 + 80197 0.69 0.869927
Target:  5'- cGGCUACgCCUGGGCgGUCGAcgACgccUCg -3'
miRNA:   3'- -CCGAUGgGGGCCUG-CAGCUcaUGa--AG- -5'
11065 5' -55.5 NC_002794.1 + 110766 0.69 0.869927
Target:  5'- aGCUGCaCCUGGACcaCGAGUGCUcCa -3'
miRNA:   3'- cCGAUGgGGGCCUGcaGCUCAUGAaG- -5'
11065 5' -55.5 NC_002794.1 + 44446 0.69 0.869927
Target:  5'- cGGCgcgcCCgCCCGGACGUCGGcgGCg-- -3'
miRNA:   3'- -CCGau--GG-GGGCCUGCAGCUcaUGaag -5'
11065 5' -55.5 NC_002794.1 + 50824 0.69 0.847403
Target:  5'- cGGCgcccccGCCCUCGGGCGUCGcgaucaacgccGUcACUUCg -3'
miRNA:   3'- -CCGa-----UGGGGGCCUGCAGCu----------CA-UGAAG- -5'
11065 5' -55.5 NC_002794.1 + 98979 0.7 0.831445
Target:  5'- cGGCgccgUGgCCUCGGugGUCGGcgGCUUCg -3'
miRNA:   3'- -CCG----AUgGGGGCCugCAGCUcaUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.