Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11065 | 5' | -55.5 | NC_002794.1 | + | 98979 | 0.7 | 0.831445 |
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Target: 5'- cGGCgccgUGgCCUCGGugGUCGGcgGCUUCg -3' miRNA: 3'- -CCG----AUgGGGGCCugCAGCUcaUGAAG- -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 77322 | 0.7 | 0.831445 |
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Target: 5'- cGcCUGCCCCUGGGCaUCGAGcUGCa-- -3' miRNA: 3'- cC-GAUGGGGGCCUGcAGCUC-AUGaag -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 123732 | 0.7 | 0.823203 |
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Target: 5'- cGCUGCCCcaCCGGGCGUuccCGAGccgugccGCUUCc -3' miRNA: 3'- cCGAUGGG--GGCCUGCA---GCUCa------UGAAG- -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 112018 | 0.7 | 0.814795 |
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Target: 5'- cGGC-GCCgCCCGaaGGCGUCGAGcACUUg -3' miRNA: 3'- -CCGaUGG-GGGC--CUGCAGCUCaUGAAg -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 39388 | 0.7 | 0.806229 |
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Target: 5'- cGCUAgCCCUGGGCuUCGGGaacaGCUUCu -3' miRNA: 3'- cCGAUgGGGGCCUGcAGCUCa---UGAAG- -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 49864 | 0.7 | 0.797512 |
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Target: 5'- cGGCgcccGCCaCCCGGACGUgGAGcGCc-- -3' miRNA: 3'- -CCGa---UGG-GGGCCUGCAgCUCaUGaag -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 188028 | 0.71 | 0.77966 |
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Target: 5'- cGGCgcccucGCCguCCCGGACGcggCGAGUcucgACUUCg -3' miRNA: 3'- -CCGa-----UGG--GGGCCUGCa--GCUCA----UGAAG- -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 4519 | 0.71 | 0.77966 |
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Target: 5'- ---cGCCCCUaGACGUCGucGGUACUUCc -3' miRNA: 3'- ccgaUGGGGGcCUGCAGC--UCAUGAAG- -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 85017 | 0.71 | 0.751955 |
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Target: 5'- cGGgUGCCCCgGGcccACGcUCGGGUGCcUCg -3' miRNA: 3'- -CCgAUGGGGgCC---UGC-AGCUCAUGaAG- -5' |
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| 11065 | 5' | -55.5 | NC_002794.1 | + | 94100 | 0.73 | 0.664331 |
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Target: 5'- cGCUGuuCCUGGACGUCGAGaACg-- -3' miRNA: 3'- cCGAUggGGGCCUGCAGCUCaUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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