Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11065 | 5' | -55.5 | NC_002794.1 | + | 4145 | 0.66 | 0.957181 |
Target: 5'- uGCgagcCCCCCGGACGaCGAGg----- -3' miRNA: 3'- cCGau--GGGGGCCUGCaGCUCaugaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 4519 | 0.71 | 0.77966 |
Target: 5'- ---cGCCCCUaGACGUCGucGGUACUUCc -3' miRNA: 3'- ccgaUGGGGGcCUGCAGC--UCAUGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 19537 | 0.66 | 0.949413 |
Target: 5'- cGGCgcgGCCCgCCGG-UGUCGGacccggacUGCUUCg -3' miRNA: 3'- -CCGa--UGGG-GGCCuGCAGCUc-------AUGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 38270 | 0.68 | 0.90334 |
Target: 5'- aGGCgcgGCCCCCGcgcGACGUagcugugcaGGGUACa-- -3' miRNA: 3'- -CCGa--UGGGGGC---CUGCAg--------CUCAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 39388 | 0.7 | 0.806229 |
Target: 5'- cGCUAgCCCUGGGCuUCGGGaacaGCUUCu -3' miRNA: 3'- cCGAUgGGGGCCUGcAGCUCa---UGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 44446 | 0.69 | 0.869927 |
Target: 5'- cGGCgcgcCCgCCCGGACGUCGGcgGCg-- -3' miRNA: 3'- -CCGau--GG-GGGCCUGCAGCUcaUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 47347 | 0.68 | 0.915168 |
Target: 5'- cGGCgGCCUCCGGACGUucgcgcucaagcCGAGgcCg-- -3' miRNA: 3'- -CCGaUGGGGGCCUGCA------------GCUCauGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 48029 | 0.7 | 0.831445 |
Target: 5'- cGGCgucaCgCCGGACGcCGAGUGCg-- -3' miRNA: 3'- -CCGaug-GgGGCCUGCaGCUCAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 49864 | 0.7 | 0.797512 |
Target: 5'- cGGCgcccGCCaCCCGGACGUgGAGcGCc-- -3' miRNA: 3'- -CCGa---UGG-GGGCCUGCAgCUCaUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 50824 | 0.69 | 0.847403 |
Target: 5'- cGGCgcccccGCCCUCGGGCGUCGcgaucaacgccGUcACUUCg -3' miRNA: 3'- -CCGa-----UGGGGGCCUGCAGCu----------CA-UGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 77322 | 0.7 | 0.831445 |
Target: 5'- cGcCUGCCCCUGGGCaUCGAGcUGCa-- -3' miRNA: 3'- cC-GAUGGGGGCCUGcAGCUC-AUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 79965 | 0.67 | 0.931208 |
Target: 5'- uGGCguacgACCCCCGGcucgGCGaCGAGgagGCg-- -3' miRNA: 3'- -CCGa----UGGGGGCC----UGCaGCUCa--UGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 80197 | 0.69 | 0.869927 |
Target: 5'- cGGCUACgCCUGGGCgGUCGAcgACgccUCg -3' miRNA: 3'- -CCGAUGgGGGCCUG-CAGCUcaUGa--AG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 85017 | 0.71 | 0.751955 |
Target: 5'- cGGgUGCCCCgGGcccACGcUCGGGUGCcUCg -3' miRNA: 3'- -CCgAUGGGGgCC---UGC-AGCUCAUGaAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 91037 | 0.66 | 0.956071 |
Target: 5'- gGGCgGCCCUCGGgguggacggggcgcGCGUCGucauGUACg-- -3' miRNA: 3'- -CCGaUGGGGGCC--------------UGCAGCu---CAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 94100 | 0.73 | 0.664331 |
Target: 5'- cGCUGuuCCUGGACGUCGAGaACg-- -3' miRNA: 3'- cCGAUggGGGCCUGCAGCUCaUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 98979 | 0.7 | 0.831445 |
Target: 5'- cGGCgccgUGgCCUCGGugGUCGGcgGCUUCg -3' miRNA: 3'- -CCG----AUgGGGGCCugCAGCUcaUGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 101604 | 0.68 | 0.890621 |
Target: 5'- gGGUgccgGCCCgCCGGGCGg-GGGUGCcguUUCg -3' miRNA: 3'- -CCGa---UGGG-GGCCUGCagCUCAUG---AAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 104452 | 0.66 | 0.960741 |
Target: 5'- gGGCgGCCcgagCCCGGGCGgCGuGUGCa-- -3' miRNA: 3'- -CCGaUGG----GGGCCUGCaGCuCAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 110766 | 0.69 | 0.869927 |
Target: 5'- aGCUGCaCCUGGACcaCGAGUGCUcCa -3' miRNA: 3'- cCGAUGgGGGCCUGcaGCUCAUGAaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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