Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11065 | 5' | -55.5 | NC_002794.1 | + | 188028 | 0.71 | 0.77966 |
Target: 5'- cGGCgcccucGCCguCCCGGACGcggCGAGUcucgACUUCg -3' miRNA: 3'- -CCGa-----UGG--GGGCCUGCa--GCUCA----UGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 154214 | 0.67 | 0.945199 |
Target: 5'- uGGCgcgGCaaggCgUGGACcUCGAGUACUUCc -3' miRNA: 3'- -CCGa--UGg---GgGCCUGcAGCUCAUGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 150581 | 0.66 | 0.960741 |
Target: 5'- cGcCUGCCCUCGGGCGccCGAGgACg-- -3' miRNA: 3'- cC-GAUGGGGGCCUGCa-GCUCaUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 144365 | 0.67 | 0.920195 |
Target: 5'- cGGCUGCCguucuacuCCCGGgugcucugcaacuGCGagGAGUGCgUCg -3' miRNA: 3'- -CCGAUGG--------GGGCC-------------UGCagCUCAUGaAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 131043 | 0.66 | 0.960741 |
Target: 5'- cGGCUGCCgCCGauguuCGUCGAcgacgagacGUugUUCc -3' miRNA: 3'- -CCGAUGGgGGCcu---GCAGCU---------CAugAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 123926 | 0.66 | 0.949413 |
Target: 5'- cGGacCUGCCCCCGGGCacCGcGUACcgUCu -3' miRNA: 3'- -CC--GAUGGGGGCCUGcaGCuCAUGa-AG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 123732 | 0.7 | 0.823203 |
Target: 5'- cGCUGCCCcaCCGGGCGUuccCGAGccgugccGCUUCc -3' miRNA: 3'- cCGAUGGG--GGCCUGCA---GCUCa------UGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 123399 | 0.67 | 0.931208 |
Target: 5'- uGCUGCUCCgCGucGGCGUgGAGUACg-- -3' miRNA: 3'- cCGAUGGGG-GC--CUGCAgCUCAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 113315 | 0.68 | 0.909366 |
Target: 5'- cGCUACCCgCCGGGcCGUCaGGUAg--- -3' miRNA: 3'- cCGAUGGG-GGCCU-GCAGcUCAUgaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 112018 | 0.7 | 0.814795 |
Target: 5'- cGGC-GCCgCCCGaaGGCGUCGAGcACUUg -3' miRNA: 3'- -CCGaUGG-GGGC--CUGCAGCUCaUGAAg -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 110766 | 0.69 | 0.869927 |
Target: 5'- aGCUGCaCCUGGACcaCGAGUGCUcCa -3' miRNA: 3'- cCGAUGgGGGCCUGcaGCUCAUGAaG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 104452 | 0.66 | 0.960741 |
Target: 5'- gGGCgGCCcgagCCCGGGCGgCGuGUGCa-- -3' miRNA: 3'- -CCGaUGG----GGGCCUGCaGCuCAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 101604 | 0.68 | 0.890621 |
Target: 5'- gGGUgccgGCCCgCCGGGCGg-GGGUGCcguUUCg -3' miRNA: 3'- -CCGa---UGGG-GGCCUGCagCUCAUG---AAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 98979 | 0.7 | 0.831445 |
Target: 5'- cGGCgccgUGgCCUCGGugGUCGGcgGCUUCg -3' miRNA: 3'- -CCG----AUgGGGGCCugCAGCUcaUGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 94100 | 0.73 | 0.664331 |
Target: 5'- cGCUGuuCCUGGACGUCGAGaACg-- -3' miRNA: 3'- cCGAUggGGGCCUGCAGCUCaUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 91037 | 0.66 | 0.956071 |
Target: 5'- gGGCgGCCCUCGGgguggacggggcgcGCGUCGucauGUACg-- -3' miRNA: 3'- -CCGaUGGGGGCC--------------UGCAGCu---CAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 85017 | 0.71 | 0.751955 |
Target: 5'- cGGgUGCCCCgGGcccACGcUCGGGUGCcUCg -3' miRNA: 3'- -CCgAUGGGGgCC---UGC-AGCUCAUGaAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 80197 | 0.69 | 0.869927 |
Target: 5'- cGGCUACgCCUGGGCgGUCGAcgACgccUCg -3' miRNA: 3'- -CCGAUGgGGGCCUG-CAGCUcaUGa--AG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 79965 | 0.67 | 0.931208 |
Target: 5'- uGGCguacgACCCCCGGcucgGCGaCGAGgagGCg-- -3' miRNA: 3'- -CCGa----UGGGGGCC----UGCaGCUCa--UGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 77322 | 0.7 | 0.831445 |
Target: 5'- cGcCUGCCCCUGGGCaUCGAGcUGCa-- -3' miRNA: 3'- cC-GAUGGGGGCCUGcAGCUC-AUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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