Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11065 | 5' | -55.5 | NC_002794.1 | + | 19537 | 0.66 | 0.949413 |
Target: 5'- cGGCgcgGCCCgCCGG-UGUCGGacccggacUGCUUCg -3' miRNA: 3'- -CCGa--UGGG-GGCCuGCAGCUc-------AUGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 154214 | 0.67 | 0.945199 |
Target: 5'- uGGCgcgGCaaggCgUGGACcUCGAGUACUUCc -3' miRNA: 3'- -CCGa--UGg---GgGCCUGcAGCUCAUGAAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 123926 | 0.66 | 0.949413 |
Target: 5'- cGGacCUGCCCCCGGGCacCGcGUACcgUCu -3' miRNA: 3'- -CC--GAUGGGGGCCUGcaGCuCAUGa-AG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 79965 | 0.67 | 0.931208 |
Target: 5'- uGGCguacgACCCCCGGcucgGCGaCGAGgagGCg-- -3' miRNA: 3'- -CCGa----UGGGGGCC----UGCaGCUCa--UGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 123399 | 0.67 | 0.931208 |
Target: 5'- uGCUGCUCCgCGucGGCGUgGAGUACg-- -3' miRNA: 3'- cCGAUGGGG-GC--CUGCAgCUCAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 144365 | 0.67 | 0.920195 |
Target: 5'- cGGCUGCCguucuacuCCCGGgugcucugcaacuGCGagGAGUGCgUCg -3' miRNA: 3'- -CCGAUGG--------GGGCC-------------UGCagCUCAUGaAG- -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 113315 | 0.68 | 0.909366 |
Target: 5'- cGCUACCCgCCGGGcCGUCaGGUAg--- -3' miRNA: 3'- cCGAUGGG-GGCCU-GCAGcUCAUgaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 47347 | 0.68 | 0.915168 |
Target: 5'- cGGCgGCCUCCGGACGUucgcgcucaagcCGAGgcCg-- -3' miRNA: 3'- -CCGaUGGGGGCCUGCA------------GCUCauGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 38270 | 0.68 | 0.90334 |
Target: 5'- aGGCgcgGCCCCCGcgcGACGUagcugugcaGGGUACa-- -3' miRNA: 3'- -CCGa--UGGGGGC---CUGCAg--------CUCAUGaag -5' |
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11065 | 5' | -55.5 | NC_002794.1 | + | 85017 | 0.71 | 0.751955 |
Target: 5'- cGGgUGCCCCgGGcccACGcUCGGGUGCcUCg -3' miRNA: 3'- -CCgAUGGGGgCC---UGC-AGCUCAUGaAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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