miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11067 3' -57.1 NC_002794.1 + 116624 0.66 0.940486
Target:  5'- gCCcAGGCGGU--AGAGCGgcaGggGcCCg -3'
miRNA:   3'- -GGcUCCGCCGcaUCUCGCg--CuuCaGG- -5'
11067 3' -57.1 NC_002794.1 + 184503 0.66 0.940486
Target:  5'- cCCG-GGCGGCGcGGgccccgcgcgcGGCGCGGGcgacgCCg -3'
miRNA:   3'- -GGCuCCGCCGCaUC-----------UCGCGCUUca---GG- -5'
11067 3' -57.1 NC_002794.1 + 66626 0.66 0.940486
Target:  5'- --uAGGCGGUGgcGGGaG-GAGGUCCg -3'
miRNA:   3'- ggcUCCGCCGCauCUCgCgCUUCAGG- -5'
11067 3' -57.1 NC_002794.1 + 14272 0.66 0.940486
Target:  5'- aCCGAGGUGuucggcuggaGCGUcAGcgucgaGGCGCGggGUa- -3'
miRNA:   3'- -GGCUCCGC----------CGCA-UC------UCGCGCuuCAgg -5'
11067 3' -57.1 NC_002794.1 + 53276 0.66 0.940486
Target:  5'- aCGGGGCGGCG-AGcgaccacuccaGGUGcCGAgcGGUCg -3'
miRNA:   3'- gGCUCCGCCGCaUC-----------UCGC-GCU--UCAGg -5'
11067 3' -57.1 NC_002794.1 + 12217 0.66 0.940036
Target:  5'- gCCGGcggcgucGGCGGCGcc-GGCGgCGccGUCCg -3'
miRNA:   3'- -GGCU-------CCGCCGCaucUCGC-GCuuCAGG- -5'
11067 3' -57.1 NC_002794.1 + 32590 0.66 0.935888
Target:  5'- gCCGGGGcCGGgGccGGGGC-CGggG-CCg -3'
miRNA:   3'- -GGCUCC-GCCgCa-UCUCGcGCuuCaGG- -5'
11067 3' -57.1 NC_002794.1 + 48848 0.66 0.935888
Target:  5'- -gGAGaucCGGC--AGGGCGCGAuAGUCCc -3'
miRNA:   3'- ggCUCc--GCCGcaUCUCGCGCU-UCAGG- -5'
11067 3' -57.1 NC_002794.1 + 131202 0.66 0.935888
Target:  5'- gCCGGGGCGGCGcc-GGUGUacaugaccgucuGGAGUUa -3'
miRNA:   3'- -GGCUCCGCCGCaucUCGCG------------CUUCAGg -5'
11067 3' -57.1 NC_002794.1 + 147141 0.66 0.935888
Target:  5'- uUCGAGaCGGCcccGGGGcCGCGAGGgCCa -3'
miRNA:   3'- -GGCUCcGCCGca-UCUC-GCGCUUCaGG- -5'
11067 3' -57.1 NC_002794.1 + 112508 0.66 0.935888
Target:  5'- gCGAGcggucGCGGUGcu-GGCGCagGAGGUCCa -3'
miRNA:   3'- gGCUC-----CGCCGCaucUCGCG--CUUCAGG- -5'
11067 3' -57.1 NC_002794.1 + 42571 0.66 0.935888
Target:  5'- cCCGcGGCGGacccgcggaCGgaggAGGGCGCGgcGgCCg -3'
miRNA:   3'- -GGCuCCGCC---------GCa---UCUCGCGCuuCaGG- -5'
11067 3' -57.1 NC_002794.1 + 184648 0.66 0.935888
Target:  5'- gCGucGGCGGCGUAGcaacGGC-UGuAGUCCc -3'
miRNA:   3'- gGCu-CCGCCGCAUC----UCGcGCuUCAGG- -5'
11067 3' -57.1 NC_002794.1 + 47300 0.66 0.935416
Target:  5'- cCCGAGGuCGGUuuuucuuccgaggGUGGGGUGCccGGcUCCc -3'
miRNA:   3'- -GGCUCC-GCCG-------------CAUCUCGCGcuUC-AGG- -5'
11067 3' -57.1 NC_002794.1 + 4789 0.66 0.931071
Target:  5'- cCCGuGGgGGgGUauugcguacGGAGCGCGucgcGUUCg -3'
miRNA:   3'- -GGCuCCgCCgCA---------UCUCGCGCuu--CAGG- -5'
11067 3' -57.1 NC_002794.1 + 121151 0.66 0.931071
Target:  5'- uCCGAGGCugcgaaGGCGUucAGAucgGCaGCGGGcUCCg -3'
miRNA:   3'- -GGCUCCG------CCGCA--UCU---CG-CGCUUcAGG- -5'
11067 3' -57.1 NC_002794.1 + 66737 0.66 0.931071
Target:  5'- gCCGGcGGUGGCGgcG-GCGCGuacGaCCg -3'
miRNA:   3'- -GGCU-CCGCCGCauCuCGCGCuu-CaGG- -5'
11067 3' -57.1 NC_002794.1 + 140002 0.66 0.931071
Target:  5'- aCGGuGCGG-GUGGAGgcCGCGGAGgCCg -3'
miRNA:   3'- gGCUcCGCCgCAUCUC--GCGCUUCaGG- -5'
11067 3' -57.1 NC_002794.1 + 42487 0.66 0.928075
Target:  5'- gCCGGGGcCGaGCGgAGAGUGUGAgaaagagcgagagagAGcCCg -3'
miRNA:   3'- -GGCUCC-GC-CGCaUCUCGCGCU---------------UCaGG- -5'
11067 3' -57.1 NC_002794.1 + 65177 0.66 0.926033
Target:  5'- gCCGAGacCGGCG-GGuGCcgGCGAGGUCg -3'
miRNA:   3'- -GGCUCc-GCCGCaUCuCG--CGCUUCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.