miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11067 5' -53.2 NC_002794.1 + 55541 0.66 0.978961
Target:  5'- gUCGccCUCCcguuUGCUCUUGCcGUACUg -3'
miRNA:   3'- -AGCuuGAGGu---GCGAGAACGaCGUGAa -5'
11067 5' -53.2 NC_002794.1 + 183688 0.66 0.976559
Target:  5'- gUCGAGCgcccgCCGCGCgcg-GCgGCACa- -3'
miRNA:   3'- -AGCUUGa----GGUGCGagaaCGaCGUGaa -5'
11067 5' -53.2 NC_002794.1 + 85025 0.66 0.976559
Target:  5'- cCGGGC-CCACGCUCgggUGCcucgggcccGCGCUc -3'
miRNA:   3'- aGCUUGaGGUGCGAGa--ACGa--------CGUGAa -5'
11067 5' -53.2 NC_002794.1 + 126116 0.66 0.973962
Target:  5'- cUGGGCgCCGCGCUCgu-CUGCGCc- -3'
miRNA:   3'- aGCUUGaGGUGCGAGaacGACGUGaa -5'
11067 5' -53.2 NC_002794.1 + 14468 0.66 0.973962
Target:  5'- gUCGAGCggcgcgCCGCGCUC--GCUGUucGCg- -3'
miRNA:   3'- -AGCUUGa-----GGUGCGAGaaCGACG--UGaa -5'
11067 5' -53.2 NC_002794.1 + 58308 0.66 0.971161
Target:  5'- aCGAGaccgCCGCGCUCUgcacGCcGCGCg- -3'
miRNA:   3'- aGCUUga--GGUGCGAGAa---CGaCGUGaa -5'
11067 5' -53.2 NC_002794.1 + 74861 0.66 0.968151
Target:  5'- aCGGACUCCugGCcgccUCUccGCgaacGCACUa -3'
miRNA:   3'- aGCUUGAGGugCG----AGAa-CGa---CGUGAa -5'
11067 5' -53.2 NC_002794.1 + 148056 0.67 0.964924
Target:  5'- aUCG-GCUCCGCGCUCUgGgaGC-Cg- -3'
miRNA:   3'- -AGCuUGAGGUGCGAGAaCgaCGuGaa -5'
11067 5' -53.2 NC_002794.1 + 92852 0.67 0.964252
Target:  5'- aUGGACUUCGCGCUCUacgccgccucggGCcgGCACg- -3'
miRNA:   3'- aGCUUGAGGUGCGAGAa-----------CGa-CGUGaa -5'
11067 5' -53.2 NC_002794.1 + 47560 0.67 0.953886
Target:  5'- aCGAGCUCCGacaGCUCcugGCgcaggucGCACUg -3'
miRNA:   3'- aGCUUGAGGUg--CGAGaa-CGa------CGUGAa -5'
11067 5' -53.2 NC_002794.1 + 63071 0.68 0.940714
Target:  5'- gCGAGCUCCugGg-CcgGCUGUACUUc -3'
miRNA:   3'- aGCUUGAGGugCgaGaaCGACGUGAA- -5'
11067 5' -53.2 NC_002794.1 + 60579 0.68 0.935833
Target:  5'- aUGAGCUCCACGCcgggCcUGCUggagGCGCa- -3'
miRNA:   3'- aGCUUGAGGUGCGa---GaACGA----CGUGaa -5'
11067 5' -53.2 NC_002794.1 + 46362 0.68 0.930705
Target:  5'- aCGAGaccgUCCACGCUCUccggGC-GCGCUa -3'
miRNA:   3'- aGCUUg---AGGUGCGAGAa---CGaCGUGAa -5'
11067 5' -53.2 NC_002794.1 + 94989 0.68 0.9197
Target:  5'- -gGAGCUCUGuCGCcgCUUGCUGuCGCUg -3'
miRNA:   3'- agCUUGAGGU-GCGa-GAACGAC-GUGAa -5'
11067 5' -53.2 NC_002794.1 + 114526 0.71 0.842028
Target:  5'- gUCGAGCggcagCCGCGCga--GCUGCGCg- -3'
miRNA:   3'- -AGCUUGa----GGUGCGagaaCGACGUGaa -5'
11067 5' -53.2 NC_002794.1 + 125817 0.71 0.816333
Target:  5'- cCGGGCUCUGCGUcCUcggcgcccugcUGCUGCGCUg -3'
miRNA:   3'- aGCUUGAGGUGCGaGA-----------ACGACGUGAa -5'
11067 5' -53.2 NC_002794.1 + 56997 0.72 0.779677
Target:  5'- uUCGAGCUCaGCGCcgCUagccUGCUGCACc- -3'
miRNA:   3'- -AGCUUGAGgUGCGa-GA----ACGACGUGaa -5'
11067 5' -53.2 NC_002794.1 + 194734 0.73 0.730833
Target:  5'- aCGAACUCCACGCacc-GCUGCAg-- -3'
miRNA:   3'- aGCUUGAGGUGCGagaaCGACGUgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.