miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 144989 0.66 0.685864
Target:  5'- gACCGG-CGCcgGGCGucCGCCuGGCGCAGc -3'
miRNA:   3'- gUGGCCgGCG--CCGU--GCGGcCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 193299 0.66 0.685864
Target:  5'- uCGCCGuCCGCucCGCGCCGcACGCAGc -3'
miRNA:   3'- -GUGGCcGGCGccGUGCGGCcUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 71061 0.66 0.685864
Target:  5'- aGCCGccGCCGCaGCAgcCGCCGGGuC-CAGa -3'
miRNA:   3'- gUGGC--CGGCGcCGU--GCGGCCU-GuGUC- -5'
11068 3' -63.3 NC_002794.1 + 132901 0.66 0.685864
Target:  5'- -cCCGGaCCuGCGGCG-GCCGGuCACu- -3'
miRNA:   3'- guGGCC-GG-CGCCGUgCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 32017 0.66 0.685864
Target:  5'- gACCaGGCaggggaCGCGGCGCuGCC-GAUACAGc -3'
miRNA:   3'- gUGG-CCG------GCGCCGUG-CGGcCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 145562 0.66 0.676392
Target:  5'- gACCGGuUCGCGGacgaGCGCC-GACGgAGc -3'
miRNA:   3'- gUGGCC-GGCGCCg---UGCGGcCUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 118683 0.66 0.676392
Target:  5'- gGCCGccGCCgGCGGCAgCGCCcaGGAgCGCAu -3'
miRNA:   3'- gUGGC--CGG-CGCCGU-GCGG--CCU-GUGUc -5'
11068 3' -63.3 NC_002794.1 + 59220 0.66 0.676392
Target:  5'- -cUCGGCCGCGGCGCGCgagcucuuCGCGc -3'
miRNA:   3'- guGGCCGGCGCCGUGCGgccu----GUGUc -5'
11068 3' -63.3 NC_002794.1 + 131195 0.66 0.676392
Target:  5'- gCACgGcGCCGgGGCgGCGCCGGuguACAUg- -3'
miRNA:   3'- -GUGgC-CGGCgCCG-UGCGGCC---UGUGuc -5'
11068 3' -63.3 NC_002794.1 + 55864 0.66 0.676392
Target:  5'- uGCgGGCCGCGaucuGCGCGCCcaguGCACGa -3'
miRNA:   3'- gUGgCCGGCGC----CGUGCGGcc--UGUGUc -5'
11068 3' -63.3 NC_002794.1 + 130385 0.66 0.676392
Target:  5'- cCGCUgaGGCCGCcuGGC-UGUCGGACGCc- -3'
miRNA:   3'- -GUGG--CCGGCG--CCGuGCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 43504 0.66 0.676392
Target:  5'- cCGCCaGGCCgGUGaaaGCGCGCCGGuagcuCGCGa -3'
miRNA:   3'- -GUGG-CCGG-CGC---CGUGCGGCCu----GUGUc -5'
11068 3' -63.3 NC_002794.1 + 151582 0.66 0.676392
Target:  5'- -cCCGGCgGC-GCGCGCCGccgcCGCGGg -3'
miRNA:   3'- guGGCCGgCGcCGUGCGGCcu--GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 145730 0.66 0.676392
Target:  5'- gCGCUGGagGCGGCgGCGCCGG-CAUc- -3'
miRNA:   3'- -GUGGCCggCGCCG-UGCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 145812 0.66 0.676392
Target:  5'- aCGCCGccGCCgGCGGCGaGCCGaGCGCGu -3'
miRNA:   3'- -GUGGC--CGG-CGCCGUgCGGCcUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 137651 0.66 0.675443
Target:  5'- gCGCCgGGCCucCGGCGcCGCUGGugcggacGCACGGu -3'
miRNA:   3'- -GUGG-CCGGc-GCCGU-GCGGCC-------UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 69178 0.66 0.675443
Target:  5'- uCACCGGgCGCugauuccGGCACGCgGccCGCAGc -3'
miRNA:   3'- -GUGGCCgGCG-------CCGUGCGgCcuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 100054 0.66 0.666889
Target:  5'- gUACCGGCUcaGCGaCACGCUGGAgCugGc -3'
miRNA:   3'- -GUGGCCGG--CGCcGUGCGGCCU-GugUc -5'
11068 3' -63.3 NC_002794.1 + 107890 0.66 0.666889
Target:  5'- gCGgCGGgUGCGGC-UGCCGGGuCugAGg -3'
miRNA:   3'- -GUgGCCgGCGCCGuGCGGCCU-GugUC- -5'
11068 3' -63.3 NC_002794.1 + 147573 0.66 0.666889
Target:  5'- gGCCaaGGCCgaGCGGCACaCCGaGGCGCu- -3'
miRNA:   3'- gUGG--CCGG--CGCCGUGcGGC-CUGUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.