Results 1 - 20 of 307 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11068 | 3' | -63.3 | NC_002794.1 | + | 147573 | 0.66 | 0.666889 |
Target: 5'- gGCCaaGGCCgaGCGGCACaCCGaGGCGCu- -3' miRNA: 3'- gUGG--CCGG--CGCCGUGcGGC-CUGUGuc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 118683 | 0.66 | 0.676392 |
Target: 5'- gGCCGccGCCgGCGGCAgCGCCcaGGAgCGCAu -3' miRNA: 3'- gUGGC--CGG-CGCCGU-GCGG--CCU-GUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 59220 | 0.66 | 0.676392 |
Target: 5'- -cUCGGCCGCGGCGCGCgagcucuuCGCGc -3' miRNA: 3'- guGGCCGGCGCCGUGCGgccu----GUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 137651 | 0.66 | 0.675443 |
Target: 5'- gCGCCgGGCCucCGGCGcCGCUGGugcggacGCACGGu -3' miRNA: 3'- -GUGG-CCGGc-GCCGU-GCGGCC-------UGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 131195 | 0.66 | 0.676392 |
Target: 5'- gCACgGcGCCGgGGCgGCGCCGGuguACAUg- -3' miRNA: 3'- -GUGgC-CGGCgCCG-UGCGGCC---UGUGuc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 69178 | 0.66 | 0.675443 |
Target: 5'- uCACCGGgCGCugauuccGGCACGCgGccCGCAGc -3' miRNA: 3'- -GUGGCCgGCG-------CCGUGCGgCcuGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 193422 | 0.66 | 0.666889 |
Target: 5'- cCGCCGcccgucguccaGCCGUccGGCACGCCGcccACGCAc -3' miRNA: 3'- -GUGGC-----------CGGCG--CCGUGCGGCc--UGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 100054 | 0.66 | 0.666889 |
Target: 5'- gUACCGGCUcaGCGaCACGCUGGAgCugGc -3' miRNA: 3'- -GUGGCCGG--CGCcGUGCGGCCU-GugUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 107890 | 0.66 | 0.666889 |
Target: 5'- gCGgCGGgUGCGGC-UGCCGGGuCugAGg -3' miRNA: 3'- -GUgGCCgGCGCCGuGCGGCCU-GugUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 145562 | 0.66 | 0.676392 |
Target: 5'- gACCGGuUCGCGGacgaGCGCC-GACGgAGc -3' miRNA: 3'- gUGGCC-GGCGCCg---UGCGGcCUGUgUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 55864 | 0.66 | 0.676392 |
Target: 5'- uGCgGGCCGCGaucuGCGCGCCcaguGCACGa -3' miRNA: 3'- gUGgCCGGCGC----CGUGCGGcc--UGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 130385 | 0.66 | 0.676392 |
Target: 5'- cCGCUgaGGCCGCcuGGC-UGUCGGACGCc- -3' miRNA: 3'- -GUGG--CCGGCG--CCGuGCGGCCUGUGuc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 193299 | 0.66 | 0.685864 |
Target: 5'- uCGCCGuCCGCucCGCGCCGcACGCAGc -3' miRNA: 3'- -GUGGCcGGCGccGUGCGGCcUGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 71061 | 0.66 | 0.685864 |
Target: 5'- aGCCGccGCCGCaGCAgcCGCCGGGuC-CAGa -3' miRNA: 3'- gUGGC--CGGCGcCGU--GCGGCCU-GuGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 132901 | 0.66 | 0.685864 |
Target: 5'- -cCCGGaCCuGCGGCG-GCCGGuCACu- -3' miRNA: 3'- guGGCC-GG-CGCCGUgCGGCCuGUGuc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 43504 | 0.66 | 0.676392 |
Target: 5'- cCGCCaGGCCgGUGaaaGCGCGCCGGuagcuCGCGa -3' miRNA: 3'- -GUGG-CCGG-CGC---CGUGCGGCCu----GUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 151582 | 0.66 | 0.676392 |
Target: 5'- -cCCGGCgGC-GCGCGCCGccgcCGCGGg -3' miRNA: 3'- guGGCCGgCGcCGUGCGGCcu--GUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 32017 | 0.66 | 0.685864 |
Target: 5'- gACCaGGCaggggaCGCGGCGCuGCC-GAUACAGc -3' miRNA: 3'- gUGG-CCG------GCGCCGUG-CGGcCUGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 145730 | 0.66 | 0.676392 |
Target: 5'- gCGCUGGagGCGGCgGCGCCGG-CAUc- -3' miRNA: 3'- -GUGGCCggCGCCG-UGCGGCCuGUGuc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 145812 | 0.66 | 0.676392 |
Target: 5'- aCGCCGccGCCgGCGGCGaGCCGaGCGCGu -3' miRNA: 3'- -GUGGC--CGG-CGCCGUgCGGCcUGUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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