miRNA display CGI


Results 41 - 60 of 307 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 151582 0.66 0.676392
Target:  5'- -cCCGGCgGC-GCGCGCCGccgcCGCGGg -3'
miRNA:   3'- guGGCCGgCGcCGUGCGGCcu--GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 43504 0.66 0.676392
Target:  5'- cCGCCaGGCCgGUGaaaGCGCGCCGGuagcuCGCGa -3'
miRNA:   3'- -GUGG-CCGG-CGC---CGUGCGGCCu----GUGUc -5'
11068 3' -63.3 NC_002794.1 + 132901 0.66 0.685864
Target:  5'- -cCCGGaCCuGCGGCG-GCCGGuCACu- -3'
miRNA:   3'- guGGCC-GG-CGCCGUgCGGCCuGUGuc -5'
11068 3' -63.3 NC_002794.1 + 71061 0.66 0.685864
Target:  5'- aGCCGccGCCGCaGCAgcCGCCGGGuC-CAGa -3'
miRNA:   3'- gUGGC--CGGCGcCGU--GCGGCCU-GuGUC- -5'
11068 3' -63.3 NC_002794.1 + 193299 0.66 0.685864
Target:  5'- uCGCCGuCCGCucCGCGCCGcACGCAGc -3'
miRNA:   3'- -GUGGCcGGCGccGUGCGGCcUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 137651 0.66 0.675443
Target:  5'- gCGCCgGGCCucCGGCGcCGCUGGugcggacGCACGGu -3'
miRNA:   3'- -GUGG-CCGGc-GCCGU-GCGGCC-------UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 131195 0.66 0.676392
Target:  5'- gCACgGcGCCGgGGCgGCGCCGGuguACAUg- -3'
miRNA:   3'- -GUGgC-CGGCgCCG-UGCGGCC---UGUGuc -5'
11068 3' -63.3 NC_002794.1 + 170551 0.66 0.657361
Target:  5'- --gUGGCCGCcuacGGUguaugcuCGUCGGACACGGg -3'
miRNA:   3'- gugGCCGGCG----CCGu------GCGGCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 79343 0.66 0.665937
Target:  5'- cCGCCcGaUCGCGGCGCagagccuGUCGGACACGc -3'
miRNA:   3'- -GUGGcC-GGCGCCGUG-------CGGCCUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 88957 0.66 0.665937
Target:  5'- uCGCuCGGUacgagCGUGGC-CGCCGGAUcgucgcgGCAGa -3'
miRNA:   3'- -GUG-GCCG-----GCGCCGuGCGGCCUG-------UGUC- -5'
11068 3' -63.3 NC_002794.1 + 145405 0.66 0.665937
Target:  5'- cCGCgCGGCCuuaaagcGCGGCGCGCCGccgucggcuCACGa -3'
miRNA:   3'- -GUG-GCCGG-------CGCCGUGCGGCcu-------GUGUc -5'
11068 3' -63.3 NC_002794.1 + 187716 0.66 0.666889
Target:  5'- uCACgGGCCGCaaCACGCCGcuAUACGGc -3'
miRNA:   3'- -GUGgCCGGCGccGUGCGGCc-UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 75365 0.66 0.666889
Target:  5'- cCACCGacccGCCGCGGC-CGgCGGcgGCGGc -3'
miRNA:   3'- -GUGGC----CGGCGCCGuGCgGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 95767 0.66 0.666889
Target:  5'- gCGgCGGCCGCgacGGCG-GCCGGggcgagagGCGCGGc -3'
miRNA:   3'- -GUgGCCGGCG---CCGUgCGGCC--------UGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 63486 0.66 0.666889
Target:  5'- cCGCCGucgacgacGCCGCGGCGuCGUCGucCGCGa -3'
miRNA:   3'- -GUGGC--------CGGCGCCGU-GCGGCcuGUGUc -5'
11068 3' -63.3 NC_002794.1 + 147573 0.66 0.666889
Target:  5'- gGCCaaGGCCgaGCGGCACaCCGaGGCGCu- -3'
miRNA:   3'- gUGG--CCGG--CGCCGUGcGGC-CUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 107890 0.66 0.666889
Target:  5'- gCGgCGGgUGCGGC-UGCCGGGuCugAGg -3'
miRNA:   3'- -GUgGCCgGCGCCGuGCGGCCU-GugUC- -5'
11068 3' -63.3 NC_002794.1 + 100054 0.66 0.666889
Target:  5'- gUACCGGCUcaGCGaCACGCUGGAgCugGc -3'
miRNA:   3'- -GUGGCCGG--CGCcGUGCGGCCU-GugUc -5'
11068 3' -63.3 NC_002794.1 + 193422 0.66 0.666889
Target:  5'- cCGCCGcccgucguccaGCCGUccGGCACGCCGcccACGCAc -3'
miRNA:   3'- -GUGGC-----------CGGCG--CCGUGCGGCc--UGUGUc -5'
11068 3' -63.3 NC_002794.1 + 69178 0.66 0.675443
Target:  5'- uCACCGGgCGCugauuccGGCACGCgGccCGCAGc -3'
miRNA:   3'- -GUGGCCgGCG-------CCGUGCGgCcuGUGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.