Results 21 - 40 of 307 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11068 | 3' | -63.3 | NC_002794.1 | + | 185171 | 0.75 | 0.231431 |
Target: 5'- cCGCCGG-CGCGGCGCGgUCGG-CGCGGu -3' miRNA: 3'- -GUGGCCgGCGCCGUGC-GGCCuGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 102641 | 0.75 | 0.231431 |
Target: 5'- cCGCCGGCUgGCGGCGCGCuCGGAgGa-- -3' miRNA: 3'- -GUGGCCGG-CGCCGUGCG-GCCUgUguc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 108453 | 0.75 | 0.211195 |
Target: 5'- --gCGGCgGCGGCcCGCCGG-CACGGg -3' miRNA: 3'- gugGCCGgCGCCGuGCGGCCuGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 191010 | 0.75 | 0.231431 |
Target: 5'- gAUCGGCCGUucgaucGGCACguucaGCCGGACGCAc -3' miRNA: 3'- gUGGCCGGCG------CCGUG-----CGGCCUGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 82688 | 0.75 | 0.226224 |
Target: 5'- aCGCCGuucGCC-CGGCGCGCCGaGACGCGc -3' miRNA: 3'- -GUGGC---CGGcGCCGUGCGGC-CUGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 121388 | 0.75 | 0.206379 |
Target: 5'- cCGCCGGgaCCGCGGCcgGCGCCGGGacCGCGa -3' miRNA: 3'- -GUGGCC--GGCGCCG--UGCGGCCU--GUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 53767 | 0.75 | 0.231431 |
Target: 5'- uGCCGGCgGCGGgACGCCcGcGACGCGc -3' miRNA: 3'- gUGGCCGgCGCCgUGCGG-C-CUGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 151779 | 0.75 | 0.221116 |
Target: 5'- gACCGcGCCGCuGCACGCCaGACGcCGGg -3' miRNA: 3'- gUGGC-CGGCGcCGUGCGGcCUGU-GUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 80389 | 0.74 | 0.241059 |
Target: 5'- cCGCCGcgacuaccuacucGCCGCGGCccaggugGCGCCGGGCGgGGc -3' miRNA: 3'- -GUGGC-------------CGGCGCCG-------UGCGGCCUGUgUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 101579 | 0.74 | 0.258998 |
Target: 5'- uGCCGGCCGCcgcggccgggggGGCGggugccggccCGCCGGGCGgGGg -3' miRNA: 3'- gUGGCCGGCG------------CCGU----------GCGGCCUGUgUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 145316 | 0.74 | 0.247662 |
Target: 5'- aACCGGCgCGCGGCgggcgGCGCuCGGGCccgaGCGGg -3' miRNA: 3'- gUGGCCG-GCGCCG-----UGCG-GCCUG----UGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 82951 | 0.74 | 0.253278 |
Target: 5'- gGCCcGCCGCgcacGGCGCGCaCGcGACGCAGg -3' miRNA: 3'- gUGGcCGGCG----CCGUGCG-GC-CUGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 106975 | 0.74 | 0.258998 |
Target: 5'- uCGCgCGGCgGcCGGCACGgCGGugGCGGc -3' miRNA: 3'- -GUG-GCCGgC-GCCGUGCgGCCugUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 55298 | 0.74 | 0.247662 |
Target: 5'- gGgCGGCgGCGGCgucGCGgCGGGCGCGGg -3' miRNA: 3'- gUgGCCGgCGCCG---UGCgGCCUGUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 30742 | 0.74 | 0.264824 |
Target: 5'- aACUGGCCGCGGCuggcGCGCUGGAgGa-- -3' miRNA: 3'- gUGGCCGGCGCCG----UGCGGCCUgUguc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 118279 | 0.74 | 0.23674 |
Target: 5'- gCGCCGGCguCGgGGacCGCGCCGGGCGCGu -3' miRNA: 3'- -GUGGCCG--GCgCC--GUGCGGCCUGUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 107201 | 0.74 | 0.253278 |
Target: 5'- cCGCCGGCCucgccCGGCGcCGCCGGGCGg-- -3' miRNA: 3'- -GUGGCCGGc----GCCGU-GCGGCCUGUguc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 98354 | 0.73 | 0.282936 |
Target: 5'- gACCGGCCgaucgccgcGCGGCugGCgGGAgACGu -3' miRNA: 3'- gUGGCCGG---------CGCCGugCGgCCUgUGUc -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 95020 | 0.73 | 0.282936 |
Target: 5'- gGgCGGCUguGCGGCAucuCGCCGGugGCGGc -3' miRNA: 3'- gUgGCCGG--CGCCGU---GCGGCCugUGUC- -5' |
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11068 | 3' | -63.3 | NC_002794.1 | + | 55788 | 0.73 | 0.282936 |
Target: 5'- gCGuuGGCCuccaGCGaGCgcaGCGCCGGGCGCGGg -3' miRNA: 3'- -GUggCCGG----CGC-CG---UGCGGCCUGUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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