miRNA display CGI


Results 1 - 20 of 307 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11068 3' -63.3 NC_002794.1 + 62076 0.82 0.07598
Target:  5'- aCGCCGGCggcgacgacggcgaCGCGGCGCGCCGGACGg-- -3'
miRNA:   3'- -GUGGCCG--------------GCGCCGUGCGGCCUGUguc -5'
11068 3' -63.3 NC_002794.1 + 76532 0.81 0.081882
Target:  5'- cCACCGGCCGCGGCgccgacgcggucgcGCGCCGGGUACu- -3'
miRNA:   3'- -GUGGCCGGCGCCG--------------UGCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 38461 0.81 0.088879
Target:  5'- gGCgCGGCCGCGGCGCGCCcuuuauGGGCGgAGg -3'
miRNA:   3'- gUG-GCCGGCGCCGUGCGG------CCUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 113878 0.8 0.098122
Target:  5'- gCGCuCGGCCGCGGCGCGCguCGG-CGCGGu -3'
miRNA:   3'- -GUG-GCCGGCGCCGUGCG--GCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 14589 0.8 0.100571
Target:  5'- aGCgGGCCGUGGCgagcGCGCCGGGCACc- -3'
miRNA:   3'- gUGgCCGGCGCCG----UGCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 116948 0.8 0.105643
Target:  5'- -cCCGGCgGCGGCGuCGgCGGGCGCAGg -3'
miRNA:   3'- guGGCCGgCGCCGU-GCgGCCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 68761 0.8 0.108268
Target:  5'- aGCCgGGCCGcCGGgGCGCCGGACGCc- -3'
miRNA:   3'- gUGG-CCGGC-GCCgUGCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 555 0.79 0.113704
Target:  5'- -cCCGGCCuCGGCGCGgCGGugGCAGg -3'
miRNA:   3'- guGGCCGGcGCCGUGCgGCCugUGUC- -5'
11068 3' -63.3 NC_002794.1 + 32295 0.79 0.122336
Target:  5'- cCGCCGccGCCGCGGCggccGCGCCGGcCGCGGc -3'
miRNA:   3'- -GUGGC--CGGCGCCG----UGCGGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 121034 0.78 0.131574
Target:  5'- gGCCGGagaGCGGCGCGUCGGGCGCc- -3'
miRNA:   3'- gUGGCCgg-CGCCGUGCGGCCUGUGuc -5'
11068 3' -63.3 NC_002794.1 + 111650 0.78 0.131574
Target:  5'- gCGCCgcGGCCGCGGcCACGCCcgucGGAUACGGu -3'
miRNA:   3'- -GUGG--CCGGCGCC-GUGCGG----CCUGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 185272 0.78 0.134793
Target:  5'- cCGCCGGCCGagugGGC-CGCCGGACAgguCAGc -3'
miRNA:   3'- -GUGGCCGGCg---CCGuGCGGCCUGU---GUC- -5'
11068 3' -63.3 NC_002794.1 + 106219 0.78 0.141451
Target:  5'- cCACCGucGCCGCGGcCGCGCuCGGGuCGCAGa -3'
miRNA:   3'- -GUGGC--CGGCGCC-GUGCG-GCCU-GUGUC- -5'
11068 3' -63.3 NC_002794.1 + 37744 0.77 0.155676
Target:  5'- cCGCCGGCgGCGGCGCGgCGGcGCcgGCGGg -3'
miRNA:   3'- -GUGGCCGgCGCCGUGCgGCC-UG--UGUC- -5'
11068 3' -63.3 NC_002794.1 + 42671 0.76 0.179446
Target:  5'- cCGCCGGCaCGgGGUACGCCGaGAC-CGGc -3'
miRNA:   3'- -GUGGCCG-GCgCCGUGCGGC-CUGuGUC- -5'
11068 3' -63.3 NC_002794.1 + 49020 0.76 0.179446
Target:  5'- gCGgCGGCCGCGGCGuCGuCCGG-CGCGGu -3'
miRNA:   3'- -GUgGCCGGCGCCGU-GC-GGCCuGUGUC- -5'
11068 3' -63.3 NC_002794.1 + 112339 0.76 0.197033
Target:  5'- gCGCCGGCCgGCGGCGCcggcgGCgGGGCGgGGa -3'
miRNA:   3'- -GUGGCCGG-CGCCGUG-----CGgCCUGUgUC- -5'
11068 3' -63.3 NC_002794.1 + 19259 0.76 0.197033
Target:  5'- gACCGGCCGCGGCcC-CCGuGGCGCGu -3'
miRNA:   3'- gUGGCCGGCGCCGuGcGGC-CUGUGUc -5'
11068 3' -63.3 NC_002794.1 + 121388 0.75 0.206379
Target:  5'- cCGCCGGgaCCGCGGCcgGCGCCGGGacCGCGa -3'
miRNA:   3'- -GUGGCC--GGCGCCG--UGCGGCCU--GUGUc -5'
11068 3' -63.3 NC_002794.1 + 108453 0.75 0.211195
Target:  5'- --gCGGCgGCGGCcCGCCGG-CACGGg -3'
miRNA:   3'- gugGCCGgCGCCGuGCGGCCuGUGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.